Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_M12
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70311-1|CAA94376.2|  420|Caenorhabditis elegans Hypothetical pr...    49   2e-06
Z81127-5|CAB03390.2|  512|Caenorhabditis elegans Hypothetical pr...    34   0.072
AL023856-3|CAA19562.2|  335|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z83236-5|CAB05784.1|  315|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AL110482-6|CAB60339.1|  179|Caenorhabditis elegans Hypothetical ...    28   4.7  
U41746-5|AAT81186.1|  492|Caenorhabditis elegans Innexin protein...    27   8.2  
U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein...    27   8.2  

>Z70311-1|CAA94376.2|  420|Caenorhabditis elegans Hypothetical
           protein T25B9.1 protein.
          Length = 420

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 22/60 (36%), Positives = 35/60 (58%)
 Frame = +3

Query: 444 NRRVTVWCANDYLGTSRHPSVQDAAISAIRSYGTGAGGTRNIAGNSQMTEKLEAEISKLH 623
           ++ V  +CAN+YLG S HP V  A   A+ ++G G    R I G   + ++LE +I++ H
Sbjct: 66  DKPVINFCANNYLGLSSHPEVIAAGQKALETHGAGLSSVRFICGTQDIHKELEQKIAQFH 125


>Z81127-5|CAB03390.2|  512|Caenorhabditis elegans Hypothetical
           protein T22G5.5 protein.
          Length = 512

 Score = 34.3 bits (75), Expect = 0.072
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +3

Query: 378 VFRKVSRLAADGAYPSALEGAENRRVTVWCANDYLGTSRHPSV-QDAAISAIRSYGTGAG 554
           + R   R   D  +     G E+  + +   N YLG S    V  +AA + I  YG   G
Sbjct: 112 IVRLKDRYTDDHGWTQKYTGTESEVINLGSYN-YLGFSHRSGVCAEAAAAHIDKYGINCG 170

Query: 555 GTRNIAGNSQMTEKLEAEISK 617
           G+R   GN    + +E+ I++
Sbjct: 171 GSRQEIGNHVAHKSVESTIAQ 191


>AL023856-3|CAA19562.2|  335|Caenorhabditis elegans Hypothetical
           protein Y94A7B.6 protein.
          Length = 335

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 457 LYGVPTIIWVHPVILLYKMLP 519
           L GVPT++W   +I ++KM+P
Sbjct: 86  LIGVPTVVWSLGIIAVFKMVP 106


>Z83236-5|CAB05784.1|  315|Caenorhabditis elegans Hypothetical
           protein K10H10.6 protein.
          Length = 315

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 472 LAHHTVTLRFSAPSRALGYAPSAAKRDTFLKT 377
           LAH TV +R SAPSR +  + + + R  F K+
Sbjct: 137 LAHFTVMVRLSAPSRIVILSSTLSSRHGFKKS 168


>Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical
           protein F58G11.2 protein.
          Length = 960

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 248 AERDHIRGSGGNDGRHRRVNETISI*KFFPRADQREE 358
           + RDH  G+GG+D   RR  +  S  + + R D R++
Sbjct: 20  SNRDHRHGNGGSDAGQRRREDHNSSYQSYRRPDGRQD 56


>AL110482-6|CAB60339.1|  179|Caenorhabditis elegans Hypothetical
           protein Y39G8B.7 protein.
          Length = 179

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
 Frame = +2

Query: 446 PQSDCMVCQ-RLFGYIPSSFCTRCCHKC 526
           P S+C  C      +    FCT CC+ C
Sbjct: 113 PDSNCKDCSPNCASWAKRGFCTNCCYSC 140


>U41746-5|AAT81186.1|  492|Caenorhabditis elegans Innexin protein
           10, isoform b protein.
          Length = 492

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/25 (44%), Positives = 20/25 (80%)
 Frame = -1

Query: 383 ENTVRVILLLRADLLVEKIFILIWF 309
           E+T++ +L++  ++  EKIFIL+WF
Sbjct: 267 EHTIQCVLVI--NIFNEKIFILLWF 289


>U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein
           10, isoform a protein.
          Length = 559

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/25 (44%), Positives = 20/25 (80%)
 Frame = -1

Query: 383 ENTVRVILLLRADLLVEKIFILIWF 309
           E+T++ +L++  ++  EKIFIL+WF
Sbjct: 267 EHTIQCVLVI--NIFNEKIFILLWF 289


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,447,663
Number of Sequences: 27780
Number of extensions: 307746
Number of successful extensions: 1038
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)