Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_M06
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    29   0.25 
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    27   1.3  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    25   7.1  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    24   9.4  

>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 29.5 bits (63), Expect = 0.25
 Identities = 17/57 (29%), Positives = 22/57 (38%)
 Frame = +3

Query: 96  NSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNMNP*ALDRRRRFQSSQLSTQAIRHP 266
           N  V  DG +  VVI  P   F+ P+N  S N +P           S L    +  P
Sbjct: 402 NHSVTGDGEAKQVVITMPSTHFT-PANNSSANHSPLMAPNASTLNPSSLGASNLSQP 457


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 300 LYETFTSHHGREGVVSLGWIIGMIEID 220
           +YET T  + + GVVS+G I+ +  +D
Sbjct: 320 VYETTTKEYAKHGVVSVGKILDIRGVD 346


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 120 CRPMEHHYCPPRELCLRQP 64
           C P   H+C    LCL+ P
Sbjct: 25  CSPQTSHWCKYPALCLKSP 43


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 151 SGFAITTWSLLPSDGTPLL 95
           S F +  W++LP  G P+L
Sbjct: 899 SCFVLRIWNMLPETGVPIL 917


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,602,027
Number of Sequences: 5004
Number of extensions: 27888
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)