Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_M06
         (451 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0795 - 24683023-24683155,24685853-24686057,24686275-246864...    30   0.99 
07_03_0297 - 16383159-16383626                                         29   2.3  
11_06_0632 + 25674807-25675477,25676472-25677861,25677948-256780...    28   4.0  
12_02_1229 + 27197464-27197481,27200438-27201583,27201935-272022...    27   5.3  
12_02_0219 + 15822050-15824896                                         27   7.0  
09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801...    27   9.2  
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692...    27   9.2  

>06_03_0795 -
           24683023-24683155,24685853-24686057,24686275-24686443,
           24686590-24686775,24686916-24687124,24687197-24687362
          Length = 355

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 126 HYCRPMEHHYCPPRELCLRQPW 61
           HYCR +E+ YC  + L  R+ W
Sbjct: 181 HYCRSIENWYCLSKTLAEREAW 202


>07_03_0297 - 16383159-16383626
          Length = 155

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 229 NHPNYPPKRYDTLSPVVGSKCLIKISDFKTRRNDD 333
           NH NY   R+D L+PVV    LI+ +D  T  N +
Sbjct: 95  NHTNYQQYRWDCLNPVV-DLLLIEFNDRFTETNSN 128


>11_06_0632 +
           25674807-25675477,25676472-25677861,25677948-25678083,
           25678185-25678282,25678470-25678535,25678699-25678827,
           25679570-25679746,25680576-25680614
          Length = 901

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 84  HVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNMNP 200
           +  DN  +P D ++ + V    DP F+   NG +  MNP
Sbjct: 290 NTTDNDSLPDDSSAFNQV-PKSDPLFTSEFNGDTKYMNP 327


>12_02_1229 +
           27197464-27197481,27200438-27201583,27201935-27202201,
           27202849-27202882,27202997-27203100,27203174-27203308,
           27203367-27203511,27203864-27203880
          Length = 621

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 108 PSDGNSDHVVIANPDPFFSQPSNGPSGNMNP*ALDRRRR 224
           P   +S H+++ +P   F  P++  +    P  L RRRR
Sbjct: 402 PMSPSSSHLILISPSHAFGLPNDAVAFRQPPLLLPRRRR 440


>12_02_0219 + 15822050-15824896
          Length = 948

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 1   DNSDTIRQ*KLSC-FSSSPYWPWLPQTEFTWWTIVV 105
           D  D +R+ ++ C F+  P WPWL     ++ T+V+
Sbjct: 269 DFGDPLRKHEMHCRFTQGPPWPWLAVAS-SYGTLVI 303


>09_02_0511 -
           10079180-10079355,10079656-10079722,10080144-10080181,
           10080255-10080336
          Length = 120

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 87  VVDNSGVPSDGNSDHVVIANPDPFFSQPSNG 179
           +++N+G  S GN   ++  N  PFF   SNG
Sbjct: 57  ILNNAGATSKGNYALILPVNEFPFFLVYSNG 87


>03_02_0260 -
           6924532-6924757,6925443-6925546,6925729-6926007,
           6926093-6926368,6926460-6926678,6926758-6926926,
           6927208-6927382,6927489-6927600,6929566-6929820
          Length = 604

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 87  VVDNSGVPSDGNSDHVVIANPDPFFSQP 170
           V++N  +P   N  HVV+ANP P    P
Sbjct: 248 VLENCQLPH-ANHGHVVLANPSPILFYP 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,558,168
Number of Sequences: 37544
Number of extensions: 194606
Number of successful extensions: 425
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)