Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_M05
(438 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 1.3
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 27 1.7
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 26 2.2
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 26 2.9
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 2.9
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po... 25 3.9
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces... 25 3.9
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa... 25 5.1
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple... 25 6.7
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 25 6.7
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 25 6.7
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 24 8.9
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 27.1 bits (57), Expect = 1.3
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = -1
Query: 393 NTGSSFKNILNSFGK*SLTMFVPNMFHSL*AYSTMFLLPSESSLFTTRFITSPXPSFSN 217
+TG+ N L+S T ++PN S+ A ST L + S T+ TS PS S+
Sbjct: 528 STGALSSNSLSSSTSSVSTSYIPNASSSVYASSTEALSSNSLSSSTSSASTSYIPSASS 586
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 26.6 bits (56), Expect = 1.7
Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 2/133 (1%)
Frame = +2
Query: 2 KQLRIETSEMILTITVL--SALVTQASLTPLSNLTVAFINYEELSPLNNINSYEQLYDSV 175
++L IE +++ + + S V ++L +S+L E++S + L+D V
Sbjct: 720 EKLNIELLNLLINVVFVTESPGVKISALRLISSLINKCEKDEDISSFISSKGVTSLWDKV 779
Query: 176 VVGDYKAAVMKTLRLENDGXGEVINLVVNRLLSEGKRNIVEYAYKLWNMFGTNIVKDHFP 355
G K E++ +V+ V L+S + A+KL + V D
Sbjct: 780 YTGTPK---------ESEAALDVLAWVDKALVSRKHSEGIPLAFKLLDTLNLQNVGDSSV 830
Query: 356 KEFRMFLNEDPVL 394
K + + +DP L
Sbjct: 831 KALSIIIKDDPAL 843
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 26.2 bits (55), Expect = 2.2
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +2
Query: 2 KQLRIETSEMILTITVLSALVTQAS--LTPLSNLTVAFINY--EELSPLNNINSYEQLYD 169
KQ S+ I + + S + S + L+ T A+I Y EE+ PLN N Y D
Sbjct: 312 KQKVFLQSKQIFCVPINSLMANSDSVDILELTRNTDAYIWYSVEEIDPLNTYNIYYTNED 371
Query: 170 SVVVGD 187
+ +V D
Sbjct: 372 TSIVLD 377
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 25.8 bits (54), Expect = 2.9
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 308 KLWNMF--GTNIVKDHFPKEFRMFLNEDPVLIINKRDELALKLQ 433
KL N + T +KD+ L+EDP++ + + +E A +LQ
Sbjct: 726 KLGNQYYNDTQWLKDNLDSHLSHTLSEDPLIKVEELEEKAKRLQ 769
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 2.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 44 TVLSALVTQASLTPLSNLTVAFINYEELSPLNNINS 151
+V S T AS TPLS++ +PL ++NS
Sbjct: 443 SVNSTTATSASSTPLSSVNSTTATSASSTPLTSVNS 478
Score = 25.4 bits (53), Expect = 3.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 53 SALVTQASLTPLSNLTVAFINYEELSPLNNINS 151
S T AS TPLS++ +PL+++NS
Sbjct: 430 STTATSASSTPLSSVNSTTATSASSTPLSSVNS 462
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 44 TVLSALVTQASLTPLSNLTVAFINYEELSPLNNINS 151
+V S T AS TPL+++ +PL ++NS
Sbjct: 345 SVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNS 380
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 44 TVLSALVTQASLTPLSNLTVAFINYEELSPLNNINS 151
+V S T AS TPL+++ +PL ++NS
Sbjct: 459 SVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNS 494
>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 278
Score = 25.4 bits (53), Expect = 3.9
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 257 VNRLLSEGKRNIVEYAYKLWNMFGTNIVKDHFPKEF 364
V+RLL KRN+ + + + + NI++++ KEF
Sbjct: 117 VDRLLDLCKRNLSTFTIDISSSWRQNIIENNEQKEF 152
>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 279
Score = 25.4 bits (53), Expect = 3.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3
Query: 379 VQKHSKLFWEVIFDY 335
V KH KLFW V DY
Sbjct: 4 VGKHVKLFWNVYSDY 18
>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.0 bits (52), Expect = 5.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 293 VEYAYKLWNMFGTNIVKDHFPKEFR 367
V+ A W TN+ +D F KE+R
Sbjct: 324 VDEALVFWRKSFTNVTEDKFNKEYR 348
>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
beta subunit Tfg2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 24.6 bits (51), Expect = 6.7
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 305 YKLWNMFGTNIVKDHFPKEFRMFLNE--DPVLIINKRDELALKLQL 436
Y+ W + G + K+ ++L E D + I+NKR ALK L
Sbjct: 207 YEYWTLKGLR----EYVKQPEVYLKEVLDSIAILNKRGPYALKYSL 248
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 24.6 bits (51), Expect = 6.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 110 INYEELSPLNNINSYEQLYDSVV 178
+N ++ L +INS E LYDS V
Sbjct: 21 LNDAKIKSLTSINSAEYLYDSFV 43
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 24.6 bits (51), Expect = 6.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 102 LHLLTTKSFRHSITSTLTN 158
+ +L ++ RHS+TST+TN
Sbjct: 284 IEVLYMENSRHSVTSTITN 302
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 24.2 bits (50), Expect = 8.9
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +2
Query: 248 NLVVNRLLSEGKRNIVEYAYKLWNMFGTNIVKDHFPKEFRMFLNEDPVLIINKRDELALK 427
NL+++ LS R I++ Y W TN+V F FR E VL+ E+ LK
Sbjct: 592 NLIISDSLSRIVRQILQNLYTEWVHEKTNLV---FATMFRTIFRE--VLLDGIASEVYLK 646
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,557,998
Number of Sequences: 5004
Number of extensions: 27211
Number of successful extensions: 111
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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