Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_M04
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330     29   0.57 
05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281     29   3.8  
06_01_1186 - 10195175-10195621,10195882-10195930,10196019-101961...    28   6.7  

>03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330
          Length = 380

 Score = 28.7 bits (61), Expect(2) = 0.57
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 560 NGISGXIGLNVDGNTERLVVESWLTNLEVVWVTS 459
           NG +     +  G T+R+++ SWL+ LE+ + T+
Sbjct: 224 NGFTEAPETSNSGQTKRVLLSSWLSTLELAYTTA 257



 Score = 21.4 bits (43), Expect(2) = 0.57
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 428 VSGIKLAIVKECD*FLNDNIIDFNADEMKFL 336
           VSG ++A+  +    L+ N++  + DEM  L
Sbjct: 298 VSGTRIALGDDGSIALSRNVVVLHVDEMLLL 328


>05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281
          Length = 518

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 34  NRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLS 165
           NR+ R L++  +++    E I +    CMKK+   ++N L  +S
Sbjct: 39  NRLLRSLVNIHEQETYSREIITEAIESCMKKQADNLVNTLDVIS 82


>06_01_1186 -
           10195175-10195621,10195882-10195930,10196019-10196168,
           10196513-10196658,10196877-10196914,10197000-10197216,
           10197393-10197611,10197753-10197879,10198631-10198812,
           10198928-10199131,10199773-10199782,10200789-10200815,
           10201072-10201132,10201731-10201851
          Length = 665

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
 Frame = +3

Query: 390 VTFFDYSQFDATNSVFLTKKEIKTSYPHNFKVRQPRLNHKPFSVTI----DVXSDXATDA 557
           VT FD  +  A   +FL K+ ++        +RQ    H P   ++    +  +  A+  
Sbjct: 481 VTHFDKVEMKALEQIFLQKQRLQQEMLKYMSLRQTSQAHYPVRYSVFFYCNATAFVASLV 540

Query: 558 VXKIFLGPKYNDHGFPI 608
           +  + L   ++ HG+ +
Sbjct: 541 ITMLLLSSTFSFHGYRV 557


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,862,842
Number of Sequences: 37544
Number of extensions: 284443
Number of successful extensions: 663
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)