Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_M03
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    30   0.18 
SPMIT.08 |||mitochondrial ribosomal small subunit|Schizosaccharo...    28   0.55 
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p...    26   2.2  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    26   2.2  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    25   5.2  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    25   5.2  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    24   9.0  

>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 29.9 bits (64), Expect = 0.18
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = +2

Query: 161 PQILSIYSALSIGTLAQ-ILNPYTLDRRRAIPFLPNHPAPSLYERYLSPVLG--SNCLIM 331
           P  L + +  ++  L + I+NP +L    A PFLP+   PS  E    P+L   +  L +
Sbjct: 86  PDTLDLTNPDALPVLGESIVNPISLPVDVASPFLPSECYPSKVELPYFPLLSKPNTLLSL 145

Query: 332 ISDIYTRRIYYWTYSIFRILNFI 400
           ++D       Y+ YS+  I   +
Sbjct: 146 LNDEEISCCEYYCYSVAPITTIL 168


>SPMIT.08 |||mitochondrial ribosomal small
           subunit|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 227

 Score = 28.3 bits (60), Expect = 0.55
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +2

Query: 146 RSYGEPQILS--IYSALSIGTLAQILNPYTLDRRRAIPFLPNHPAPSLYERYLSPVLGSN 319
           ++Y  P I+S  I  ALS   L    N   +   RA+P    + +  ++ +Y++ ++GSN
Sbjct: 67  KNYPNPSIISNIIQKALSNHLLYSSKNYSFIVNIRALPISTPYGSSLIFSKYIAIIIGSN 126


>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 535

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 179 YSALSIGTLAQILNPYTLDRRRAIPFLPNHPAPSLYERYLSPV 307
           Y   SI  +A++ + YT D+          P+P+ Y+R LSP+
Sbjct: 480 YPVNSIAVMAKVADKYTTDK----------PSPTWYQRLLSPI 512


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 323 DSYFPTRARDIARIGLVLD-DWARRGSPDAGPGYK 222
           D+Y+    R + R G VL  +WA++  P +GPG K
Sbjct: 62  DAYYEVHGRRLERGGGVLRVEWAKQ-PPPSGPGSK 95


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 15/69 (21%), Positives = 35/69 (50%)
 Frame = -3

Query: 239 AGPGYKGSESALESRLIVLSRLKGSVVRHNYVVTITVSMGLLLLCYARSNRLYVDSP*AI 60
           +G  YKGS+  ++  + ++  +  + +    +  IT+S  LL+ C    ++L    P  +
Sbjct: 219 SGVKYKGSDFPIDKLMFLIRNMSKANIYTTILSCITIS--LLIGCRNLKSKLSAKYPRIV 276

Query: 59  TVGMKVILV 33
           ++   VI++
Sbjct: 277 SIPDAVIIL 285


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 166 DPFNLLSTINRDSSADSE 219
           +PFNLL  ++RD SA  E
Sbjct: 856 NPFNLLVALDRDGSATGE 873


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 164 VVRHNYVVTITVSMGLLLLCYARSNRLYVD 75
           V+ +NY  T+  S  L+L CYA  + + +D
Sbjct: 707 VLGNNYFTTLIFSSLLILACYAFVSLICMD 736


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,753,496
Number of Sequences: 5004
Number of extensions: 35334
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)