Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_M03
         (442 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0783 - 6554140-6554400,6554742-6556491,6556531-6556844           29   1.3  
09_06_0210 - 21597470-21598093                                         29   2.2  
09_03_0216 - 13529869-13530894                                         27   6.7  
05_01_0584 - 5230266-5230447,5230453-5230554,5230902-5230987,523...    27   6.7  
03_05_0915 + 28755584-28756139,28756695-28756846,28756994-287569...    27   6.7  
08_02_0263 + 15007377-15007650,15008050-15008116,15008616-150086...    27   8.8  
04_04_1542 - 34264994-34265331,34266195-34267029                       27   8.8  

>11_01_0783 - 6554140-6554400,6554742-6556491,6556531-6556844
          Length = 774

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 257 LPNHPAPSLYERYLSPVLGSNCLIMISDIYTRRIYYWTYSIFRIL 391
           L N  A  L E     +  S CLI++ D++ +++Y+     F+ L
Sbjct: 244 LNNMDAHDLKEEIKKKIEDSKCLIVLDDVWDKKVYFQMQDAFQNL 288


>09_06_0210 - 21597470-21598093
          Length = 207

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -3

Query: 296 DIARIGLVLDDWARRGSPDAGPGYKGSESALESRL 192
           D  R GL+ D W R G PD   G  G    +  RL
Sbjct: 98  DDRRWGLLPDGWLRCGGPDWDAGLHGGSGVVACRL 132


>09_03_0216 - 13529869-13530894
          Length = 341

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 233 DRRRAIPFLPNHPAPSLYERYLSPVLGSNCLIMISDIYTRRIYY 364
           +RR  +P L   P P  Y  +++P+L S   +  +++     YY
Sbjct: 54  ERRADVPALALRPVPPFYPAWITPLLLSTARVGAANLRYYSPYY 97


>05_01_0584 -
           5230266-5230447,5230453-5230554,5230902-5230987,
           5232261-5232520
          Length = 209

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 221 PYTLDRRRAIPFLPNHPAPSLYERYLSPVL 310
           P T+     +PFLPN P P  ++R  S  +
Sbjct: 21  PRTVVEHAVVPFLPNGPRPKGHDRVESTTM 50


>03_05_0915 +
           28755584-28756139,28756695-28756846,28756994-28756996,
           28757587-28757690,28758033-28758121,28758682-28758825,
           28759194-28759291,28759380-28759502,28760045-28760113,
           28760206-28760406
          Length = 512

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +2

Query: 179 YSALSIGTLAQILNPYTLDRRRAIPFLPNHPAPSLYERYLSPV 307
           YS        QILN  T DR++ + F+P  PA  +  R L+PV
Sbjct: 413 YSEFLEDLCKQILNDKTDDRQKDLTFIPLAPA-CVVIRVLTPV 454


>08_02_0263 +
           15007377-15007650,15008050-15008116,15008616-15008676,
           15008964-15009005
          Length = 147

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 181 LSTINRDSSADSEPLYPGPASGDPLLAQSSSTKPIRAI 294
           + T+  D    ++P    PA+ DP +A  +   P+ A+
Sbjct: 1   METLAPDGGGSADPTVAAPAATDPAVAGQTEANPMVAV 38


>04_04_1542 - 34264994-34265331,34266195-34267029
          Length = 390

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -3

Query: 251 GSPDAGPGYKGSESALESRLIVLSRLKGSVVRHNYVVTITV 129
           GS ++G   +GS    E++   LSRL  SVVR   VV  T+
Sbjct: 285 GSSESGEEEEGSGGEPEAKRRRLSRLGSSVVRSATVVARTL 325


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,851,769
Number of Sequences: 37544
Number of extensions: 220512
Number of successful extensions: 651
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)