Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_M02
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ...    26   5.0  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    25   6.5  
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    25   8.7  

>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 480 ENFPLQPKHISGDTTRKISQFCHYHAHTARR 572
           +N+P+Q KH+   TT  + Q  H    TA++
Sbjct: 105 DNYPIQKKHL---TTEMLRQIPHLRLRTAKQ 132


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 243 LDKIMYTNSSTRKCIIKVVKAFIHPISAPTLVSSLFATRARQL 115
           L+K+    +   + +I+V + F  P+S P LVSS       Q+
Sbjct: 183 LNKVDLPTADVDRTLIQVQQTFDIPMSKPILVSSKTGKNVEQI 225


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = -1

Query: 357 PMTENYPMKNINENLIQYLKPMITYVITFFF*SQVSLTLDKIMYTNSSTRKCIIKVVKAF 178
           P+T+ Y   +  + LI  +      V +FF     S T D+I   NS    C+I ++   
Sbjct: 46  PVTDTYSYSSARQGLITGM----VNVGSFFGCLISSPTTDRIGKRNSIIGFCVIYLIGVI 101

Query: 177 IHPISAPTLVSSLFA 133
           I   + P+ V  + A
Sbjct: 102 IQVTAVPSWVQIMVA 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,380,942
Number of Sequences: 5004
Number of extensions: 47224
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)