Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_M02
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0156 - 21273269-21273668,21273822-21273984,21274081-21274366     30   1.2  
10_08_0741 + 20235463-20235497,20237624-20237753,20238748-202389...    29   3.8  
08_01_0374 + 3301301-3301521,3301723-3301852,3301895-3301903,330...    27   8.8  

>09_06_0156 - 21273269-21273668,21273822-21273984,21274081-21274366
          Length = 282

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
 Frame = +1

Query: 454 STNRGVIYMKTSRYN------QNTFRATLLEKSHNFAIITRTQRAG 573
           ST R VIY+K   YN      QNT+  TL+    +  IIT  Q  G
Sbjct: 38  STKRYVIYIKKGTYNELITIGQNTWNLTLIGDGMDVTIITGNQSVG 83


>10_08_0741 +
           20235463-20235497,20237624-20237753,20238748-20238915,
           20239097-20239429,20239647-20239830,20239904-20240076
          Length = 340

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 304 PETDDHLRYYIFFLITGITYAR-*NYVHK 221
           P TDDH +Y+++ L+ G+ Y    N +H+
Sbjct: 104 PLTDDHCQYFLYQLLRGLKYVHSANVLHR 132


>08_01_0374 +
           3301301-3301521,3301723-3301852,3301895-3301903,
           3302349-3302486,3302616-3302948,3303280-3303463,
           3303647-3303819
          Length = 395

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 304 PETDDHLRYYIFFLITGITYAR-*NYVHK 221
           P TDDH +Y+++ ++ G+ Y    N +H+
Sbjct: 159 PLTDDHCQYFLYQVLRGLKYVHSANVLHR 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,388,773
Number of Sequences: 37544
Number of extensions: 269662
Number of successful extensions: 516
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)