Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_M02
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92786-7|CAB07209.1|  145|Caenorhabditis elegans Hypothetical pr...    31   0.85 
AF440508-1|AAL34096.1|  144|Caenorhabditis elegans SKR-5 protein.      31   0.85 
U00033-4|AAC48305.2|  348|Caenorhabditis elegans Serpentine rece...    30   1.5  
AF003144-4|AAB54197.2|  164|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z81088-10|CAB03131.1|  337|Caenorhabditis elegans Hypothetical p...    28   6.0  

>Z92786-7|CAB07209.1|  145|Caenorhabditis elegans Hypothetical
           protein F47H4.10 protein.
          Length = 145

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 474 LYENFPLQPKHISGDTTRKISQFCHYHAHTARRPP 578
           L +  P+  K+++ +  +K+ ++C YHA    +PP
Sbjct: 37  LNQREPIPLKNVTSEIFKKVIEWCEYHAEDIPKPP 71


>AF440508-1|AAL34096.1|  144|Caenorhabditis elegans SKR-5 protein.
          Length = 144

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 474 LYENFPLQPKHISGDTTRKISQFCHYHAHTARRPP 578
           L +  P+  K+++ +  +K+ ++C YHA    +PP
Sbjct: 36  LNQREPIPLKNVTSEIFKKVIEWCEYHAEDIPKPP 70


>U00033-4|AAC48305.2|  348|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 7 protein.
          Length = 348

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 164 LIGCINALTTFIIHFLVEEFVYIILSSVSD-TCD 262
           L+G   A+  F + FLVE F+ ++L  +S+  CD
Sbjct: 63  LVGYFGAILVFSVVFLVEAFIQVLLPFISEQKCD 96


>AF003144-4|AAB54197.2|  164|Caenorhabditis elegans Hypothetical
           protein C55C2.1 protein.
          Length = 164

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 255 VSLTLDKIMYTNSSTRKCIIKVVKAFIHPIS 163
           +S T+ + +   SST  C I  V A IHP++
Sbjct: 5   ISTTIGQYVVVRSSTVPCAINTVSAAIHPVA 35


>Z81088-10|CAB03131.1|  337|Caenorhabditis elegans Hypothetical
           protein F53F1.10 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 234 IMYTNSSTRKCIIKVVKAFIHPISAPTLVS-SLFATRARQLKTGREWRQHLELTSST 67
           I++  S +R  ++K++  F  P     L   ++FA+R   L   R+W  + +L + T
Sbjct: 116 ILHNPSLSRLVLLKLILVFYIPSLIQALTYWTIFASREEILPLARQWFPYYDLDAET 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,021,172
Number of Sequences: 27780
Number of extensions: 261028
Number of successful extensions: 673
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)