Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_L24
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    26   5.1  
SPCC1393.14 |||nuclear telomere cap complex subunit Ten1|Schizos...    26   5.1  
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...    25   6.7  
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...    25   6.7  
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...    25   6.7  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   8.9  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   8.9  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 6   FFFFACLH*KHFISNQALCIKINYNKYTY 92
           F+F   LH  H I    L +   YN YTY
Sbjct: 209 FYFATGLHGIHIIVGTILLLVATYNIYTY 237


>SPCC1393.14 |||nuclear telomere cap complex subunit
           Ten1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 102

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 583 KSGTIRNPADSNSGITSIRTVWTPILRTRLKKWLNFSR*KREPNSIGVVAI 431
           K+G +R   D +S +T   TV  P +  +  +WLN    KR+   + V+ I
Sbjct: 31  KNGILRL-IDGSSSVTCDVTVVLPDVSIQKHEWLNIVGRKRQDGIVDVLLI 80


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 182 SIGGHVYRNYIKLICYKRK 126
           +I GH +RN +K + Y RK
Sbjct: 43  NISGHFFRNKLKYLAYLRK 61


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 182 SIGGHVYRNYIKLICYKRK 126
           +I GH +RN +K + Y RK
Sbjct: 43  NISGHFFRNKLKYLAYLRK 61


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 182 SIGGHVYRNYIKLICYKRK 126
           +I GH +RN +K + Y RK
Sbjct: 43  NISGHFFRNKLKYLAYLRK 61


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 155 YIKLICYKRKIAF*FIEVYLYICIFVVVYFYT 60
           Y  + C+K+ +     +++L++CIFV V F T
Sbjct: 200 YFSVRCFKKNVNNPK-DIFLHLCIFVSVSFAT 230


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 322 FVWFYLFYFIFNSDRLF 372
           F WF+ F+F F+  R F
Sbjct: 75  FYWFFFFFFFFSHCRRF 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,437,370
Number of Sequences: 5004
Number of extensions: 48152
Number of successful extensions: 114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)