Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_L24
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0136 + 31933843-31934715,31934906-31935021,31935233-319354...    31   0.98 
06_02_0280 - 13708651-13708839,13708895-13709164,13709889-137104...    28   6.9  

>03_06_0136 +
           31933843-31934715,31934906-31935021,31935233-31935408,
           31935846-31936036,31936119-31936205,31936304-31936461,
           31936555-31936765,31936856-31937005
          Length = 653

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 595 SGRRKSGTIRNPADSNSGITSIRTVWTPILRTRLKK 488
           + RR++G +   A SN G   +R + TPI+RT L+K
Sbjct: 256 AARRRNGKVEG-ALSNGGENGVRDMVTPIIRTSLEK 290


>06_02_0280 -
           13708651-13708839,13708895-13709164,13709889-13710476,
           13710511-13710686,13710897-13711029,13711193-13711462,
           13711521-13711889
          Length = 664

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 600 GEAEGARVERSETPQTRTQGLRRYGRFGHRYCELG 496
           G+A+ A V++  TPQ   +   R+G+F   +C+LG
Sbjct: 294 GQADVA-VQQCHTPQAPVEA-ERFGQFDQAFCDLG 326


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,030,756
Number of Sequences: 37544
Number of extensions: 250893
Number of successful extensions: 551
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)