Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_L24
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50794-5|CAA90660.1| 1139|Caenorhabditis elegans Hypothetical pr...    31   0.67 
AF170122-1|AAD47840.1| 1139|Caenorhabditis elegans liprin-alpha ...    31   0.67 
AF039710-9|AAB96685.2|  172|Caenorhabditis elegans Hypothetical ...    30   1.2  

>Z50794-5|CAA90660.1| 1139|Caenorhabditis elegans Hypothetical
           protein F59F5.6 protein.
          Length = 1139

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 362 TGCSGFDKEIGNRKSPTSNVLKRNGDYSDG 451
           +G     +    +K+ +S++ KRNGDYSDG
Sbjct: 801 SGLKTLGRFFNKKKNSSSDLFKRNGDYSDG 830


>AF170122-1|AAD47840.1| 1139|Caenorhabditis elegans liprin-alpha
           homolog SYD-2 protein.
          Length = 1139

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 362 TGCSGFDKEIGNRKSPTSNVLKRNGDYSDG 451
           +G     +    +K+ +S++ KRNGDYSDG
Sbjct: 801 SGLKTLGRFFNKKKNSSSDLFKRNGDYSDG 830


>AF039710-9|AAB96685.2|  172|Caenorhabditis elegans Hypothetical
           protein C46E10.8 protein.
          Length = 172

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 622 MKKHLEYRGSGRRKSGTIRNPADSNSGITSIRTVWTPIL 506
           MKKHLE   SG     ++ +PA S+SG  ++     P+L
Sbjct: 83  MKKHLETADSGAHAIPSLGSPAPSSSGFATMIVPPAPLL 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,299,694
Number of Sequences: 27780
Number of extensions: 267767
Number of successful extensions: 598
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)