Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_L24
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   5.6  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   7.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.8  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 7/24 (29%), Positives = 17/24 (70%)
 Frame = -3

Query: 143 ICYKRKIAF*FIEVYLYICIFVVV 72
           + +KR+ ++  I++Y+  C+ V+V
Sbjct: 235 LLFKREFSYYLIQIYIPCCMLVIV 258


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 7/24 (29%), Positives = 17/24 (70%)
 Frame = -3

Query: 143 ICYKRKIAF*FIEVYLYICIFVVV 72
           + +KR+ ++  I++Y+  C+ V+V
Sbjct: 235 LLFKREFSYYLIQIYIPCCMLVIV 258


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 404 SPTSNVLKRNGDYSDGVWFP 463
           S    VL  +GD+++ +W P
Sbjct: 100 SQEEEVLTLSGDFAEKIWVP 119


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 197 FMNYCSIGGHVYRNYIKLICYKRKI 123
           + NY +   + Y NY K + YK  I
Sbjct: 327 YNNYNNYNNNNYNNYNKKLYYKNYI 351


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 380 DKEIGNRKSPTSNVLKRNG 436
           +K+ G+R+ PTSN    +G
Sbjct: 318 EKDRGSREYPTSNATDTDG 336


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 103 CIYIYVYLL*FIFI 62
           CI+I+ Y++  IFI
Sbjct: 223 CIFIWAYVIPLIFI 236


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 103 CIYIYVYLL*FIFI 62
           CI+I+ Y++  IFI
Sbjct: 223 CIFIWAYVIPLIFI 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,744
Number of Sequences: 438
Number of extensions: 3719
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)