Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_L23
         (264 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    25   1.3  
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe...    23   5.3  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    23   7.0  

>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 196 DAVHERKRQPPSQKPEQELEIIRYSSDHH 110
           D++ E KRQ  S +   ELE+  Y  + H
Sbjct: 28  DSIKEAKRQNASLRVGPELEVTGYGCEDH 56


>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 443

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 20  LGQLRQAIAWVLAVPVFQHQL 82
           LG     +AW+  + VF HQL
Sbjct: 253 LGGKENEVAWIDLLQVFDHQL 273


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 9/39 (23%), Positives = 18/39 (46%)
 Frame = -3

Query: 220 DTARFEHQDAVHERKRQPPSQKPEQELEIIRYSSDHHSN 104
           +T   +H D  H  K +    K     + +++  +HH+N
Sbjct: 39  ETDDVKHTDTHHSSKHELKKLKSHFLKDTLKHKRNHHAN 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,011,767
Number of Sequences: 5004
Number of extensions: 15159
Number of successful extensions: 33
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)