Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_L23
         (264 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0004 + 12013207-12013280,12013311-12013756,12013865-12014715     27   2.1  
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604...    26   3.6  
03_01_0329 + 2558726-2559112,2559214-2559449,2559537-2559663,256...    25   6.3  
07_03_1354 - 25972597-25973787,25974381-25974680                       25   8.3  

>11_04_0004 + 12013207-12013280,12013311-12013756,12013865-12014715
          Length = 456

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = -3

Query: 187 HERKRQPPSQKPEQELEIIRYSSDHHSNRGLRFAY*LMLEDWNRKHPCNSLAKLTKILMS 8
           H R RQPP + P     ++     HH NR  R A   + E    K  C +  + T   +S
Sbjct: 134 HRRPRQPPRRGPAFMDRVV--DDIHHDNRNRRAARVSLDEGLEDKKVCLASIEFTGYALS 191


>07_03_0860 +
           22057309-22058453,22059833-22059964,22060328-22060412,
           22061666-22061867,22062273-22062344,22062509-22062573,
           22062682-22062741,22063033-22064379,22064463-22064607,
           22064688-22067442,22068540-22068630,22068655-22068873
          Length = 2105

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 205 EHQDAVHERKRQPPSQKPEQELEIIRYSSDHHS 107
           + Q  + ++K+QP SQ P Q+      SS+H S
Sbjct: 609 QQQQPLQQQKQQPQSQPPLQQTRKDVVSSNHSS 641


>03_01_0329 +
           2558726-2559112,2559214-2559449,2559537-2559663,
           2560190-2560326,2560467-2560626,2560828-2561106,
           2561750-2561920,2562636-2562717,2563397-2563623,
           2563682-2563727,2564199-2564281,2564376-2564492,
           2564965-2565036
          Length = 707

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/27 (55%), Positives = 15/27 (55%)
 Frame = -2

Query: 89  RILADAGRLEPQAPMQ*PGEADQDPHE 9
           R  AD  RL   AP   PGEADQ P E
Sbjct: 36  RARADT-RLRVAAPPSVPGEADQAPGE 61


>07_03_1354 - 25972597-25973787,25974381-25974680
          Length = 496

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 25  SASPGYCMGACGSSLPASANMRSVVLCY 108
           +A+PGY  G   S L AS    +VV  Y
Sbjct: 161 TATPGYLYGVARSELAASGRACAVVAYY 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,759,586
Number of Sequences: 37544
Number of extensions: 103954
Number of successful extensions: 286
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 14,793,348
effective HSP length: 66
effective length of database: 12,315,444
effective search space used: 258624324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)