Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_L23
         (264 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75545-3|CAA99886.1|  922|Caenorhabditis elegans Hypothetical pr...    27   1.8  
U23169-6|AAC46695.1|  393|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z19555-1|CAA79618.1|  608|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>Z75545-3|CAA99886.1|  922|Caenorhabditis elegans Hypothetical
           protein K10D3.4 protein.
          Length = 922

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 55  CGSSLPASANMRSVVLCYYDGQSY 126
           CG S  AS    +   CYYDG +Y
Sbjct: 486 CGGSSAASTTCPANHYCYYDGTTY 509


>U23169-6|AAC46695.1|  393|Caenorhabditis elegans Hypothetical
           protein C29H12.2 protein.
          Length = 393

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +2

Query: 20  LGQLRQAIAWVLAVPVFQHQLICEA*SSVTMMV 118
           L  +R  + WV+++P+F  + I    S   M++
Sbjct: 304 LDSVRTLVIWVVSIPLFHEKFIAIQLSGFAMLI 336


>Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical
           protein T21B6.3 protein.
          Length = 821

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -3

Query: 178 KRQPPSQKPEQELEIIRYSSDHHSNRGLRFAY*LMLEDWNRKHPCNSLA 32
           ++ P  Q+P+Q+ E+ R   D H+    +       E++N++HP    A
Sbjct: 340 QQHPQQQQPQQQPELERSPLDQHAQL-YQQRMSQYRENFNQRHPARPKA 387


>Z19555-1|CAA79618.1|  608|Caenorhabditis elegans Hypothetical
           protein F02A9.4a protein.
          Length = 608

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 191 CILVFKSCGILGDTYYMVSVNENL 262
           C++V     + G TYY ++V ++L
Sbjct: 176 CVIVANDATVKGGTYYPITVKKHL 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,569,564
Number of Sequences: 27780
Number of extensions: 82854
Number of successful extensions: 183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 12,740,198
effective HSP length: 66
effective length of database: 10,906,718
effective search space used: 229041078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)