Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_L20
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    26   2.6  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    24   7.9  
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    24   7.9  

>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 268 YVESLDVFSSRVILASLCKDPQYRPS 191
           Y E+L   SS ++ + LCKD + RPS
Sbjct: 244 YPETLSKNSSSLLKSLLCKDYRLRPS 269


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = -3

Query: 279 LYTTMSSHSMFFLVE*F*HHYVKTL-STDPVTKQTTVQNGGC---*PINKRDYHW 127
           ++T MS+  ++F    +  H  K L S +P+TK+  +    C     I    YHW
Sbjct: 478 IHTRMSTQIVYFKGMPYNEHNYKELDSFEPITKEAWMLGNSCFNRARIAHSIYHW 532


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 295 RWFPQGSKLKFATCQFDISIS 357
           +W P GSK K ATC  D  +S
Sbjct: 322 KWMP-GSKSKLATCGDDCVVS 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,526,224
Number of Sequences: 5004
Number of extensions: 28432
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)