Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_L19
         (240 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   1.8  
SPAC1002.01 ||SPAC1610.05|conserved fungal protein|Schizosacchar...    24   2.3  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    24   3.1  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    23   4.1  
SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces pomb...    23   5.4  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    23   7.1  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    23   7.1  
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        22   9.4  
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c...    22   9.4  

>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 129 NXXFVDSMKXKXDMQGDKSARARF 58
           N  FV+    + D  G+KS +ARF
Sbjct: 272 NNIFVERKTHREDWTGEKSVKARF 295


>SPAC1002.01 ||SPAC1610.05|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 60  FFKXFHLCXWNPTCXPG 10
           FF  FH   W PT  PG
Sbjct: 103 FFFIFHSLDWTPTGLPG 119


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 23  VGFQXHKWXXLKNLALADLSPCISXFXFIESTK 121
           VGF+ HK+  L+   L   S C+    F+  TK
Sbjct: 134 VGFRNHKFFFLECFYLNLYSICVLYSTFVAITK 166


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 194 NVDGSWTGXPSLALFQNARVN 132
           N   SW+  PS ALFQ   +N
Sbjct: 581 NTSLSWSPTPSTALFQLKNLN 601


>SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 353

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 239 EEISFLLSIFPAGVRNVDGSWTGXP 165
           + I+ +L IFP   +++   W G P
Sbjct: 289 DSITDVLKIFPKWAKDIVSIWAGLP 313


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 175 VQDPSTXRTPAGKIDNRKEISS 240
           + DPS   TP  K  N  EI S
Sbjct: 486 LNDPSPASTPVAKTINLNEIES 507


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = +2

Query: 5   LLPGXHVGFQXHKWXXLKNLALADLSPCISXFXFIEST 118
           +L G  +G    KW     L    +  C+  F FI  T
Sbjct: 303 ILLGISLGASSGKWRRANILCYLIIGGCLFVFAFIYDT 340


>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 212 FPAGVRNVDGSWTGXPSLALFQNARVNEI 126
           F +   +++G+  G P   L+QNA+ +EI
Sbjct: 324 FLSNKTSLEGARFGLPWKRLWQNAKADEI 352


>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 43  MEXLEESGPCRFITLHIPF 99
           +  ++E   CR +T+H PF
Sbjct: 233 LHSIKEDINCRVVTIHDPF 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 859,515
Number of Sequences: 5004
Number of extensions: 11654
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)