Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_L19
         (240 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81553-10|CAB04501.2|  668|Caenorhabditis elegans Hypothetical p...    25   9.5  
AF045641-5|AAC02577.2|  554|Caenorhabditis elegans Hypothetical ...    25   9.5  
AC024860-3|AAK29985.1|  345|Caenorhabditis elegans Hypothetical ...    25   9.5  

>Z81553-10|CAB04501.2|  668|Caenorhabditis elegans Hypothetical
           protein F56H6.12 protein.
          Length = 668

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 57  RIWPLQIYHLAYPXSXSSNLQKXNFINASVLK 152
           RIW   I  + Y    SSN  K + INA+ L+
Sbjct: 193 RIWQFLIGMVVYLLGASSNKLKDSKINATSLR 224


>AF045641-5|AAC02577.2|  554|Caenorhabditis elegans Hypothetical
           protein F53H1.3 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 69  LQIYHLAYPXSXSSNLQKXNF 131
           + I +LA+P S SSN +  NF
Sbjct: 47  INICYLAFPDSNSSNARDTNF 67


>AC024860-3|AAK29985.1|  345|Caenorhabditis elegans Hypothetical
           protein Y71H2AR.2 protein.
          Length = 345

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 60  FFKXFHLCXW 31
           FFK +HLC W
Sbjct: 334 FFKLYHLCTW 343


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,920,722
Number of Sequences: 27780
Number of extensions: 69788
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)