Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_L17
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    84   1e-17
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    28   0.69 
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    25   4.8  
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    25   6.4  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    25   8.4  
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    25   8.4  
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual     25   8.4  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   8.4  

>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 83.8 bits (198), Expect = 1e-17
 Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 2/143 (1%)
 Frame = +1

Query: 49  EELTRQFRLVTHAPDEIPTKNVFTGEIAR--LHSLQIQKPPYDAKNPFLAQIKVNKELHK 222
           +E    F ++        +  VF GE +R  L      K P    NPF +    + EL K
Sbjct: 222 KEYNPMFEVIEKPEISNTSSTVFLGEPSRQQLKGNVASKAPRSQANPFFSSPVRSLELFK 281

Query: 223 GGDRSCLHVELDISDSKMRYEAGDHVAVYPINDTKLVERLGELTGANLDEIFSLINTDQE 402
            G R+CLH+ELDI+DS MRY+ GD+ ++ P+N ++ V+ L E+ G        +I    +
Sbjct: 282 SGSRNCLHLELDIADSGMRYQTGDYASICPMNPSQAVDDLLEVLGLKEKRDTVIIVKPID 341

Query: 403 STKKNPFPCPTSYRTALSHYIEI 471
           +  K P   PT+Y T   +Y EI
Sbjct: 342 TLDKAPVLSPTTYDTVFRYYYEI 364


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 28.3 bits (60), Expect = 0.69
 Identities = 19/81 (23%), Positives = 36/81 (44%)
 Frame = +1

Query: 4   WPAVCEKYSIESTGEEELTRQFRLVTHAPDEIPTKNVFTGEIARLHSLQIQKPPYDAKNP 183
           +PA     S  ST + +      ++ H   E+P+ N  + ++A LH ++  + P  A++ 
Sbjct: 590 FPAPLTSISQASTFQGDNRSPSTVIPHTQTEVPSANDTSKQLASLHDMRKSQSPICARSA 649

Query: 184 FLAQIKVNKELHKGGDRSCLH 246
             A +    E H    +S  H
Sbjct: 650 TSAGLP-RFEYHTSLSKSLEH 669


>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +1

Query: 163 PYDAKNPFLAQIKVNKELHKGGDRSCLHVELDIS-DSKMRYEAGDHVAVYPINDTKLVE- 336
           P+D  + + A I+VN +  KGG    L     +     ++ E G  V  Y  +DTK  E 
Sbjct: 386 PHDVNSEYAAIIRVNSQSGKGGVAYLLKTNCGLDLPRALQVEFGSIVKDY--SDTKGKEL 443

Query: 337 RLGELT 354
            +GE++
Sbjct: 444 SIGEIS 449


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +1

Query: 379 SLINTDQESTKKNPFPCPTSYRTALSHYIEIQHY---PVRIF 495
           SL N DQ+S +   F    S    L    EI+HY   P+R F
Sbjct: 212 SLSNDDQDSVRLLSFDIMVSLAEVLKSDSEIRHYLLQPLRSF 253


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 376 FSLINTDQESTKKNPFPCP 432
           F +  +DQ+ST   PFP P
Sbjct: 185 FYVTESDQDSTPATPFPMP 203


>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/54 (20%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 19  EKYSIESTGEEELTRQFRLVTHAPDEIPTKNVFTGEIARLHSL--QIQKPPYDA 174
           EK+ ++    +  +RQ  ++ +  DE+  +N+   ++  +H L   ++ P ++A
Sbjct: 145 EKFPMKCDEIDPYSRQAIVIRYISDEVAKENIGGNQVYLIHQLLKLVRAPKFEA 198


>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = +1

Query: 400 ESTKKNPFPCPTSYRTALSHYIEIQHYPVRIFF 498
           ++ K  P+P   S++ A      ++H P R+ +
Sbjct: 233 DALKHEPYPSHFSFKQAEEFIASLEHVPSRVLY 265


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = +1

Query: 73  LVTHAPDEIPTKNVFTGEIARLHSL 147
           ++TH  D+I  +++F G +  +++L
Sbjct: 713 MITHLADQISNRSMFIGALEEIYNL 737


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,350
Number of Sequences: 5004
Number of extensions: 42930
Number of successful extensions: 116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)