Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_L17
(501 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1410 + 33363784-33364086,33364221-33364280,33364388-333644... 79 3e-15
08_01_0889 + 8753877-8754236,8754995-8755054,8755174-8755250,875... 77 1e-14
09_06_0260 - 21911358-21911438,21911715-21911828,21911911-219120... 60 1e-09
07_03_0495 + 18756415-18756499,18757163-18757491 33 0.097
01_06_0610 - 30587269-30587717,30587996-30588212,30588363-305884... 30 0.91
06_01_0200 - 1543260-1544561 30 1.2
02_05_0460 - 29224525-29224620,29225525-29226625 29 2.1
09_02_0236 - 6131072-6131639,6132047-6132180 29 2.8
03_03_0134 + 14732622-14732830,14733202-14733316,14733429-147336... 29 2.8
07_03_0001 + 12219741-12219927,12219976-12220955 27 8.5
>04_04_1410 +
33363784-33364086,33364221-33364280,33364388-33364464,
33365032-33365089,33365179-33365262,33365358-33365394,
33365855-33365924,33366655-33366849,33366947-33367039,
33367187-33367418,33367515-33367598,33368205-33368301,
33368510-33368577,33368662-33368739,33368823-33368945,
33369059-33369172,33369288-33369368
Length = 617
Score = 78.6 bits (185), Expect = 3e-15
Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 8/113 (7%)
Frame = +1
Query: 169 DAKNPFLAQIKVNKELHK-GGDRSCLHVELDISDSKMRYEAGDHVAVYPINDTKLVERLG 345
D +P + + V KELHK DRSC+H+E DIS + + YE GDHV VY N + VE+
Sbjct: 289 DIHHPVRSNVAVRKELHKPASDRSCIHLEFDISGTGLVYETGDHVGVYSENAIETVEQAE 348
Query: 346 ELTGANLDEIFSL-INTDQESTKKN------PFPCPTSYRTALSHYIEIQHYP 483
+L + D FS+ + + S +K PFP P + RTAL Y ++ + P
Sbjct: 349 KLLDLSPDTFFSVHADAEDGSPRKGGGSLAPPFPSPCTLRTALLRYADLLNSP 401
>08_01_0889 +
8753877-8754236,8754995-8755054,8755174-8755250,
8755481-8755622,8755736-8755772,8755852-8755921,
8756021-8756212,8756321-8756413,8756545-8756773,
8756861-8756944,8757041-8757192,8757279-8757375,
8757576-8757725,8757813-8757890,8757982-8758104,
8758169-8758315,8758418-8758472,8758807-8758874
Length = 737
Score = 76.6 bits (180), Expect = 1e-14
Identities = 43/114 (37%), Positives = 63/114 (55%), Gaps = 8/114 (7%)
Frame = +1
Query: 166 YDAKNPFLAQIKVNKELHK-GGDRSCLHVELDISDSKMRYEAGDHVAVYPINDTKLVERL 342
+DA++P A + V +ELH DRSC H+E DI+ + + YE GDHV VY N ++VE
Sbjct: 306 HDAQHPCRANVAVRRELHTPASDRSCTHLEFDIAGTGLTYETGDHVGVYTENCLEVVEEA 365
Query: 343 GELTGANLDEIFSLINTDQE-------STKKNPFPCPTSYRTALSHYIEIQHYP 483
L G + E F I+ D+E + PFP P + R AL+ Y ++ + P
Sbjct: 366 ERLLGYS-PEAFFTIHADKEDGTPLGGGSLAPPFPSPITVRNALARYADLLNSP 418
>09_06_0260 -
21911358-21911438,21911715-21911828,21911911-21912033,
21912342-21912419,21912498-21912647,21913505-21913601,
21913679-21913860,21913899-21913982,21914243-21914303,
21914414-21914506,21914588-21914782,21914937-21915006,
21915536-21915572,21915654-21915737,21915828-21915885,
21916008-21916084,21916185-21916244,21916325-21916687
Length = 668
Score = 60.1 bits (139), Expect = 1e-09
Identities = 28/58 (48%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +1
Query: 166 YDAKNPFLAQIKVNKELHKGGD-RSCLHVELDISDSKMRYEAGDHVAVYPINDTKLVE 336
YD ++P A + V +ELH RSC+H+E DIS + + YE GDHV VY N T+ VE
Sbjct: 308 YDIQHPCRANVAVRRELHTPASYRSCIHLEFDISGTGLTYETGDHVGVYAENCTETVE 365
>07_03_0495 + 18756415-18756499,18757163-18757491
Length = 137
Score = 33.5 bits (73), Expect = 0.097
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = -2
Query: 374 ISSRFAPVSSPRRSTNLVSFIGYTATW--SPAS*RIFESEISNST*RQDLSPPLCNSLLT 201
++S++ S + + V GY TW P RI+ + ++T +++ PLC SLLT
Sbjct: 23 VNSKYTGESQGQIEVHCVVKYGYMDTWVTPPGVGRIWAMLVRSTT--AEITVPLCPSLLT 80
Query: 200 LI*AKNGFFASYG 162
L+ G S+G
Sbjct: 81 LVPLVLGLLLSFG 93
>01_06_0610 -
30587269-30587717,30587996-30588212,30588363-30588482,
30589092-30589202,30589300-30589374,30589940-30590031,
30590121-30590302,30590479-30590570,30591179-30591283,
30591374-30591451,30591553-30591705
Length = 557
Score = 30.3 bits (65), Expect = 0.91
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 130 ARLHSLQIQKPPYDAKNPFLAQIKVNKELHK-GGDRSCLHVELDISDSKMRYEAGDHVAV 306
AR S +Q D + ++ Q+ N+ L K DR H EL+ S + Y+ GD + +
Sbjct: 212 ARSMSPSLQFYNNDKEPHYMLQMVSNRCLTKENSDRDVRHFELENPSSGITYQVGDALEI 271
Query: 307 YPINDTKLVE 336
P V+
Sbjct: 272 LPSQSPSAVD 281
>06_01_0200 - 1543260-1544561
Length = 433
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +1
Query: 34 ESTGEEELTRQFRLVTHAPDEIPTKNVFTGEIARLHSLQIQKPPYDAKNPFLAQIKVNKE 213
+S G EE + AP+ KNVF I S++ PP+ AQ +++
Sbjct: 140 QSLGSEEAVALLARL-QAPNVSAVKNVFISAIRFATSMESPSPPFLDDLKTSAQEQIDFM 198
Query: 214 LHKGGDRSCLHVELDI 261
LH+ D + + ++ D+
Sbjct: 199 LHEDDDTALVTMDEDV 214
>02_05_0460 - 29224525-29224620,29225525-29226625
Length = 398
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 124 EIARLHSLQIQKPPYDAKNPFLAQIKVNKELHKGGDRS 237
E A +I KP A + F AQ+ V++ + KGGD S
Sbjct: 335 EFAHRVGWRIHKPDAAAVDAFCAQVGVSRRVLKGGDTS 372
>09_02_0236 - 6131072-6131639,6132047-6132180
Length = 233
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 82 HAPDEIPTKNVFTGEIARLHSLQIQKPP 165
H+P PT V T ++R H++ +Q PP
Sbjct: 109 HSPAPDPTSAVATTALSRRHAIHLQPPP 136
>03_03_0134 +
14732622-14732830,14733202-14733316,14733429-14733632,
14733862-14733990,14734077-14734244,14734920-14735177,
14736051-14736096,14736574-14736601,14737206-14737295,
14738132-14738204,14738291-14738319,14738425-14738548,
14738741-14738851,14739082-14739182,14739263-14739365
Length = 595
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 100 PTKNVFTGEIARLHSLQIQKPPYDAKNPFL 189
P KN+F GE+A +Q+QK D K L
Sbjct: 424 PVKNLFGGELAYAMLIQLQKRTVDIKQAML 453
>07_03_0001 + 12219741-12219927,12219976-12220955
Length = 388
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 295 HVAVYPINDTKLVERLGELTGANLDEIFSLINTDQESTKKNPFPCPTS 438
H+A + + +L+ L L D+ L N ++ K+ PCPTS
Sbjct: 123 HIA-NEVQERELLSSLNTLGYVQFDDFCELDNLKKKLFAKSDLPCPTS 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,906,684
Number of Sequences: 37544
Number of extensions: 251671
Number of successful extensions: 710
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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