Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_L14
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    31   0.14 
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   2.3  
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    27   2.3  
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    27   3.1  
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...    26   4.1  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    26   4.1  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    26   5.4  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    26   5.4  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   7.1  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    25   9.4  
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...    25   9.4  

>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 23/89 (25%), Positives = 39/89 (43%)
 Frame = -3

Query: 375  RSQEDLDNGISGNIGLNVDGNTERLVVESWLTNLEVVWVTSLNLFFGQEYTVSGIKLAIV 196
            R QED + G   N+     G  E +  E ++          L  F G+ + +S +   I+
Sbjct: 1109 RCQEDFERGWKANLPSGKAGEAEIMSDEYYVAAAIKRRGLGLVRFIGELFKLSMLSEKIM 1168

Query: 195  KECD*FLNDNIIDFNADEMKFLLRIRLQV 109
             EC   L  N+ D   +E++ L R+ + V
Sbjct: 1169 HECIKRLLGNVTDPEEEEIESLCRLLMTV 1197


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 355 IKIFLGPKYNDXGFPITLEENWHKFYELDWFTHKIT 462
           + I L P  ND  +  T    WHKF++  WF   +T
Sbjct: 416 LHIELAPAANDIQWHNTYIGRWHKFFQ-GWFITLVT 450


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -1

Query: 590 RPSDIYNGTFPSSKNFMRSVNGKESSLKSENSFELRTILFCPGVILCVNQSSS 432
           R S I NG     K    + +GK SS  S  S +++  L  PG    ++++SS
Sbjct: 58  RLSGIINGAKLIVKESATNQSGKSSSSISPQSKKIKVALQLPGAARIIDEASS 110


>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 49  DPAFYQLYNRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFD 198
           +P F Q Y  IVG I + K + + +P+ K     + I + V+E  VT+ D
Sbjct: 6   EPEFQQAYKEIVGSIESSKLF-EVHPELKRVLPIISIPERVLEFRVTWED 54


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 569 GTFPSSKNFMRSVNGKESSLKSENSFELRTILFCPGV 459
           G FPS  +    + GK + +KS   F+L+ +L C GV
Sbjct: 131 GKFPSPVSHADDLYGKITEVKSTIKFQLKKVL-CLGV 166


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 175 EKLVTFFDYSQFDATNSVFLTKKEIKTSYPHNFKVRQPRLNHKPFSVTID-VXSDIATD 348
           E++V    + QF+A +    T+K + +  P   K R+ RL    F   +D +  D ATD
Sbjct: 591 ERVVLLEAWKQFEAMHGTEDTRKHVSSLMPQVVKKRR-RLEDGSFEEYLDYLFPDTATD 648


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 374 LSTTXMDSPSHWKKTGINSTNWIG 445
           LS   +   S+W++T ++ TNW+G
Sbjct: 208 LSVKAIIFASYWQQTVLSITNWLG 231


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +1

Query: 376 KYNDXGFPITLEENWHKFYELDWFTHKITPGQNKIVRNSNEFSLFKEDSLPXTD 537
           KYN+   P       H  ++L+W T       N + R+  EFS+F  D LP T+
Sbjct: 147 KYNNTMIP-----GAHCTFKLNWATGGGIQHNNFVSRDP-EFSIFVGDLLPTTE 194


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -3

Query: 330 LNVDGNTERLVVESWLTNLEVVWVTSLNLFFGQEYTVSGI---KLAIVKEC 187
           LN+   TE ++     ++  +V V S N FFG    + G+   K ++ ++C
Sbjct: 309 LNITRKTETILKSLKESSTPLVQVVSFNAFFGVMIAILGVQFFKASLNRQC 359


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 56   HSISYITGLWVTLTHSSIT*SLILKRNFISSALKSMMLSLRN*SH 190
            +S S I   W T  HSS+  +L   R +  S +  ++  LRN  H
Sbjct: 973  NSKSVIGENWTTCLHSSLVDNLGKYRKYDGSKILDILRVLRNKRH 1017


>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 569 GTFPSSKNFMRSVNGKESSLKSENSFELRTILFCPGV 459
           G FPS  +    + GK   +KS   F+L+ +L C GV
Sbjct: 131 GKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVL-CLGV 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,629,563
Number of Sequences: 5004
Number of extensions: 53302
Number of successful extensions: 163
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)