Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_L12
         (522 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407...    29   3.0  
04_04_0056 + 22406872-22407258,22408405-22409310                       28   4.0  
01_06_1699 - 39269477-39269574,39269690-39269929,39270029-392700...    27   9.1  
01_06_0991 + 33634334-33634454,33634656-33634939,33636250-336367...    27   9.1  
01_06_0349 - 28613059-28614240                                         27   9.1  

>03_02_0897 -
           12239375-12239458,12240035-12240116,12240213-12240714,
           12241150-12241303,12241458-12241629,12242237-12242443,
           12242926-12243323
          Length = 532

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 383 KRKSDNTCLCAHA*YKAWEKASQPEAALALVAPVCNQY 270
           KR +D+  LC H    +WEK +    AL      CN+Y
Sbjct: 347 KRSADDFPLCVHL--VSWEKENVSSEALEAARIACNKY 382


>04_04_0056 + 22406872-22407258,22408405-22409310
          Length = 430

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = +1

Query: 262 APEYWLHTGATRAKAASGCDAFSQALYYACAHKHVLSLFRFMDYQTTTMLKKFIRFLKIS 441
           A E W   G  RA +A+     ++ L  A  +KH L +  +M     + L +    ++I 
Sbjct: 95  ALERW--AGEGRAASAAELRGIARDLSRAGRYKHALEVAEWMKTHHESDLSENDYGMRID 152

Query: 442 LLTRV---NRTHFFFNKL 486
           L+TRV   N    FF KL
Sbjct: 153 LITRVFGANAAEDFFEKL 170


>01_06_1699 -
           39269477-39269574,39269690-39269929,39270029-39270092,
           39270251-39270771,39271032-39271326,39271400-39271564,
           39271650-39272237,39272617-39272703,39272982-39274429,
           39274515-39275015,39275574-39275678,39276095-39276143
          Length = 1386

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 100 CIFVCVAQVARRPLKPSTRLRYTPCTIGKDAPD 2
           C F+C+  V  RP K + + +  P  + +D+ D
Sbjct: 100 CTFICLVAVTMRPSKANQQDQNQPLLVREDSDD 132


>01_06_0991 +
           33634334-33634454,33634656-33634939,33636250-33636795,
           33643361-33643966
          Length = 518

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +1

Query: 67  AERPERHIQRCITLGANTLKDPAPELWPTPSAVIVKIVSRHQKLHP 204
           A RP  H+   +   + +   P   +WP P A     V+ ++  HP
Sbjct: 91  AARPLEHVALQLADRSRSRSAPLTPVWPCPGAFSTPTVASYRAPHP 136


>01_06_0349 - 28613059-28614240
          Length = 393

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 1   DQGRLYL*CRVCSADGWKVLGDAERPERHIQRCITL-GANTLKDPAP 138
           D G+L++ C++  + G  +   A++P     + + L G + L  PAP
Sbjct: 313 DDGKLFIDCKLVRSTGAALASPADQPAPSPVKAVRLFGVDLLTAPAP 359


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,230,881
Number of Sequences: 37544
Number of extensions: 295707
Number of successful extensions: 735
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)