Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_L08
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    27   2.2  
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch...    27   2.9  
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p...    26   5.1  
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    25   8.9  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   8.9  
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po...    25   8.9  
SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomy...    25   8.9  

>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -2

Query: 351 TLAGSRHFVTKPRDMSFSEGRSRVRLTYVDKPSPSWYRAPQTSFG--LVRSTEHKGNELV 178
           TLAGS   V KPR  S    +  VR   +DK    +++ P +  G  +V    H G  +V
Sbjct: 54  TLAGS---VPKPRIASLRTIKHPVRSEVIDKALMLYFKKPSSFTGEDVVELQLHGGTAVV 110

Query: 177 MVSL 166
            V+L
Sbjct: 111 DVTL 114


>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 532 LLSGGKTESLQDSDHIAGLQRRLEE 606
           +L GGK+ +  D+D +AG + +LEE
Sbjct: 246 ILRGGKSGTNFDADSVAGAKAKLEE 270


>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 254

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 618 GVSKFFQPALKSSD 577
           G+SK FQP LK+SD
Sbjct: 92  GISKSFQPVLKTSD 105


>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = +2

Query: 236 ARYQLGLGLSTYVRRTRERPSEKLISLGLVTK*RLPAKVNLFHNDHHDFSAKAFATKNLP 415
           AR +  L     +R    +  EK    G+  +  LPA  +   ++  DF++KA+   N  
Sbjct: 141 ARIESELFREDILRVAMAKLHEKAFHRGIGNEVYLPASASPSISEIKDFASKAYVKSNFS 200

Query: 416 NIPQVPNFNTVS 451
            I   P+    S
Sbjct: 201 VISSGPDVQKAS 212


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +2

Query: 26   PGYYIEQYEDQPAPVCQLQAAPSKRVHLTVNSPRHLRCYGQGTYNWYNDTITSSLPLCSV 205
            P +  E  +DQ   V Q   A +KRV    +S  ++   G    + ++   +S +P  ++
Sbjct: 1255 PSFKTESTDDQLEKVTQTNVASNKRVAPYADSMANV---GSPESDCFSVATSSDIPKANI 1311

Query: 206  DLT 214
            D T
Sbjct: 1312 DFT 1314


>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 412

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 267 VDKPSPSWYRAPQTSFGLVRST 202
           +D  SP WY+A   S G+V  T
Sbjct: 317 LDSMSPEWYQAADPSNGVVDGT 338


>SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 523 IKDIGLSGGRRCTNLVLEHVVHSGTDSVEVRNL 425
           IK+  L      T+ VL H+    TDS+++R+L
Sbjct: 216 IKNSTLEDSTNSTSDVLNHLESQPTDSIDLRHL 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,903
Number of Sequences: 5004
Number of extensions: 59821
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)