Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_L08
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0922 + 20834195-20836603 31 0.74
08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572... 29 2.3
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278... 29 4.0
04_04_1293 - 32418156-32418584,32420155-32420270,32421798-32421864 28 5.2
01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,410... 28 5.2
11_08_0066 - 28131521-28132012 28 6.9
01_01_0117 + 864966-865686,866860-866883,867006-868063 28 6.9
12_02_0244 - 16241243-16241279,16241781-16241848,16241930-162420... 27 9.2
05_06_0068 + 25326598-25326762,25326933-25326950 27 9.2
04_03_0916 + 20794240-20794246,20794585-20796545 27 9.2
03_01_0205 + 1621760-1621784,1622079-1622208,1622569-1622635,162... 27 9.2
>04_03_0922 + 20834195-20836603
Length = 802
Score = 31.1 bits (67), Expect = 0.74
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 373 PRFQCQSIRH*KPAKYSSSSELQHCQCQSGLHVQG-QDWCICDRRSDRCL 519
P+ QC P + +EL C+C G ++ +DW + D R+D C+
Sbjct: 291 PKVQCDVFAVCGPFTICNDNELGFCKCMKGFSIKSPKDWEL-DDRTDGCM 339
>08_01_0663 +
5721902-5723176,5724162-5724233,5724405-5724560,
5724655-5724844,5725173-5725255
Length = 591
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 475 LEHVVHSGTDSVEVRNLRNIWQVFSGECFGTEIVVVVME 359
LE + HSG + +V L N W ++ F + VV+V E
Sbjct: 417 LELLAHSGEVNKQVPRLSNFWNMYFTHHFQVDTVVMVRE 455
>10_07_0176 -
13826764-13827064,13827271-13827377,13827474-13827836,
13827912-13828079,13828153-13828374,13828784-13829023,
13829640-13829719,13829853-13830018,13830720-13830783,
13830861-13830962,13831085-13831227,13831370-13831474,
13831551-13831706,13832125-13832241,13832315-13832392,
13832466-13832550,13833334-13833455,13833546-13833611,
13835190-13835284,13835427-13835523,13835873-13835983,
13836083-13836164,13836292-13836353,13836620-13836685,
13838002-13838232
Length = 1142
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 362 HNDHHDFSAKAFATKNLPNIPQVPNFNTVSARVDYMFKDKIG 487
+ND H + A++ N P + + N N +V+Y+F DK G
Sbjct: 377 NNDLHMYHAES----NTPALARTSNLNEELGQVEYIFSDKTG 414
>04_04_1293 - 32418156-32418584,32420155-32420270,32421798-32421864
Length = 203
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +2
Query: 425 QVPNFNTVSARVDYMFKDKIGASATAAQTDVFNRNDYSLGGKLNLFKTPTTSLDFNAG 598
+ P + A D + + A+A A + VF+ D+ +GGK + PT + D + G
Sbjct: 34 EAPGGGALLAAGDDVTAANLFAAAVATEGPVFDMPDFKMGGKKSDDAAPTDAGDEDGG 91
>01_01_0558 +
4098383-4098510,4100462-4100572,4100765-4100853,
4100974-4101107,4101337-4101435,4102619-4102994,
4103883-4104337,4104419-4107409
Length = 1460
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 426 KFRTSTLSVPEWTTCSRTRLVHLRPPLRPMSLIVMTTLW 542
KF S+ E+ + S L RPP RP+ L + T+W
Sbjct: 730 KFFRHKFSLIEYGSLSNESLPERRPPGRPLELNNLRTIW 768
>11_08_0066 - 28131521-28132012
Length = 163
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = +2
Query: 122 PRHLRCYGQGTYNWYNDTITSSLPLCSVDLTKPNEVCGARYQLGLGLSTYVRRTRER 292
P H G T + T P S L EVCG +Q+G L ++RR R R
Sbjct: 81 PSHQALGGHRTSH-LRPTTNKRRPGPSKPLIHACEVCGLGFQMGQALGGHMRRHRPR 136
>01_01_0117 + 864966-865686,866860-866883,867006-868063
Length = 600
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/73 (19%), Positives = 31/73 (42%)
Frame = +2
Query: 50 EDQPAPVCQLQAAPSKRVHLTVNSPRHLRCYGQGTYNWYNDTITSSLPLCSVDLTKPNEV 229
+D P P + P+ + + + + + G+ + WY+ +TS C + + +
Sbjct: 188 KDIPMPYSYDKNGPNFDISIFTETAKRVISTGETVFTWYSSNVTSICQQCEHEGPRVTII 247
Query: 230 CGARYQLGLGLST 268
G L L ++T
Sbjct: 248 AGTFIVLSLIVAT 260
>12_02_0244 -
16241243-16241279,16241781-16241848,16241930-16242032,
16242095-16242256,16242305-16242369,16242547-16242612,
16242738-16242829,16243029-16243134,16243231-16243279,
16243387-16243540,16243661-16243687,16243797-16243959,
16244621-16244701
Length = 390
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -1
Query: 493 RCTNLVLEHVVHSGTDSVEVRN--LRNIWQVFSGECF 389
R NLV+++V HSG + +++ LRN+ FS CF
Sbjct: 354 RLQNLVMQNVDHSGGEFIDLLQGLLRNMLFGFSRICF 390
>05_06_0068 + 25326598-25326762,25326933-25326950
Length = 60
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 59 PAPVCQLQAAPSKRVHLTVNSP 124
PA C+ ++APSK + +NSP
Sbjct: 7 PAAACRSKSAPSKSARVVLNSP 28
>04_03_0916 + 20794240-20794246,20794585-20796545
Length = 655
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 373 PRFQCQSIRH*KPAKYSSSSELQHCQCQSGLHVQG-QDWCICDR 501
P+ QC P + +EL +C C G + +DW + DR
Sbjct: 136 PKAQCDVYSICGPFTVCTDNELPNCNCIKGFTITSLEDWVLEDR 179
>03_01_0205 +
1621760-1621784,1622079-1622208,1622569-1622635,
1622806-1622909,1623099-1623147,1623190-1623290,
1623623-1623740,1624342-1624455
Length = 235
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -1
Query: 568 SLEEIQFSPQRVVITIKDIGLSGGRRCTNLVLEHVVHSGTDSVE 437
+L+ ++FSP + V ++ + L+GG +C TDSV+
Sbjct: 125 TLDSVRFSPLQKVAFLEMLSLAGGTKCECHFWSSNYCGSTDSVD 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,654,634
Number of Sequences: 37544
Number of extensions: 443966
Number of successful extensions: 1093
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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