Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_L07
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    85   1e-17
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    29   0.68 
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    28   1.2  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          28   1.2  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   4.8  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    25   6.3  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   8.4  
SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit Psf2|Schizosa...    25   8.4  

>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 84.6 bits (200), Expect = 1e-17
 Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 11/165 (6%)
 Frame = +3

Query: 102 LSAISYGAIVQAIQVPDKFGILKDIVLGFDNIEAYVTRNLPYLGATVGRCANRIGGATFK 281
           +S  +YGA+VQA++   +     ++V GF++   Y  +  P+ GAT+GR ANRI    F+
Sbjct: 380 VSIANYGALVQAVRYKGR-----NLVNGFNDFSRYKLKENPFFGATIGRFANRIANGQFE 434

Query: 282 IDGATYHVAKNKGD-NHLHGGTVGFNKVNWKTSV-----DGTKVTFSHLSPDGDEGYPGD 443
           +DG  Y + KN+ +   LHGG  GF+K  +   +     D   + F  +  DG+ G+P D
Sbjct: 435 VDGHLYTLCKNENNKTTLHGGNNGFDKQFFLGPIARQYEDYNTLEFILVDKDGNNGFPSD 494

Query: 444 LVTNVTYNVSDDDSFHVEFIA-----XXXXXXXXXXXXHSYFNLA 563
           L T V Y +  ++S  +E+ +                 HSY+NLA
Sbjct: 495 LETLVKYTIK-NNSLEIEYKSVIPEYSKLNVTAVNLTNHSYWNLA 538


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 302 MVSCTVYFKGSSAYSVRTTANSCSQIRQVSSHISLYV 192
           +VSC  YF  +  Y ++   +S S  R+VS  +  YV
Sbjct: 65  LVSCLAYFTMACNYGLKNVFSSASFFREVSVRMVYYV 101


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +3

Query: 162 ILKDIVLGFDNIEAYVTRNLPYLGATVGRCANRIGGATFKIDGATYHVAKNKGDNHLHGG 341
           ++K   +  DNI A+++ +   LG  +G+  +++   TFK  G    +A    D+ +  G
Sbjct: 325 LIKYNFISIDNIWAHLSPSDEELGKELGKYKDKLDEQTFKAKGNALTMAAPLPDDEIEDG 384


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +3

Query: 42  GTFN-NTTVWKYTWRTSSGFSLSAISYGAIVQAIQVPDKFGILKDIVLGFDNI--EAYVT 212
           GTF  N ++W+  W  +S FSL  +    +++ +Q+    G L       + I  EA VT
Sbjct: 277 GTFRKNLSLWR-EWSANSAFSLHPLQLRILIRGLQLLKVGGCLVYSTCSINPIENEAVVT 335

Query: 213 RNLPYLGATV 242
             L   G  V
Sbjct: 336 AALKATGGAV 345


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -1

Query: 362 NLIKAHSASVQMVVALVLRYMVSCTVYFKGSSAYS-VRTTANSCSQIRQVSSHISL 198
           NLI A  A++   VA+   ++  C VY  GSS +S   TT +S    ++  +H+S+
Sbjct: 729 NLITA--AAMDCGVAIAGLFIYFCVVYTGGSSNFSWWGTTVSSAGCDKKGCAHLSV 782


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 231 PNTASFESHKPLCCQTL 181
           P T SF    PLCC TL
Sbjct: 452 PRTMSFSKMCPLCCTTL 468


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 377 RRRYKSHLQSPITRRRRGLPGRSGHK 454
           RRRY++ ++ P++ +RR   G    +
Sbjct: 211 RRRYRTQMEEPLSSKRRNRFGNGSRR 236


>SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit
           Psf2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 183

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -2

Query: 397 VTFVPSTDVFQLTLLKPTV----PPCKWLSPLFFATW*VAPSILKVAPP 263
           +  VPS  + QL L+  T+    PP K   PL+ A      ++ ++ PP
Sbjct: 25  INIVPSETMDQLPLVSATIPIMKPPKKCRVPLWLALELKKQNLARIVPP 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,498,139
Number of Sequences: 5004
Number of extensions: 52954
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)