Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_L04
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    31   0.37 
U40030-4|AAS80338.1|  909|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U40030-3|AAS80339.1|  911|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein ...    29   2.6  
AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 prote...    29   2.6  
Z68215-7|CAA92453.1|  289|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U61957-3|AAX55702.1|  395|Caenorhabditis elegans Temporarily ass...    27   7.9  
U61957-2|AAX55703.1|  386|Caenorhabditis elegans Temporarily ass...    27   7.9  
CU457741-7|CAM36348.1|  710|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 94  LKQLKAEAARKKACLHDCTNVKFEPIC 174
           L +L       K C H+CTN +F+P+C
Sbjct: 102 LTKLHMGRCSSKDCNHNCTNTEFDPVC 128


>U40030-4|AAS80338.1|  909|Caenorhabditis elegans Hypothetical
           protein T13C2.6a protein.
          Length = 909

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 142 DCTNVKFEPICASKNGEKPKSFGSVGVMNNYNCEHKDTLRK--VGDGECAGSDG 297
           DCTN K E  C SK  + P         NN+ C + + + K  V DGE   SDG
Sbjct: 149 DCTNGKDEQNCTSKTSKCPD--------NNFQCSNGNCIFKNWVCDGEEDCSDG 194


>U40030-3|AAS80339.1|  911|Caenorhabditis elegans Hypothetical
           protein T13C2.6b protein.
          Length = 911

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 142 DCTNVKFEPICASKNGEKPKSFGSVGVMNNYNCEHKDTLRK--VGDGECAGSDG 297
           DCTN K E  C SK  + P         NN+ C + + + K  V DGE   SDG
Sbjct: 151 DCTNGKDEQNCTSKTSKCPD--------NNFQCSNGNCIFKNWVCDGEEDCSDG 196


>U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein 756
           protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -3

Query: 355 CIYNERFH*GFVV*IKRGEFRRNQHTRHRRLSAVYLCVH 239
           C Y +RF+  ++   + G+ RR  +++ RR ++ +L VH
Sbjct: 172 CAYGDRFNPWYIELRRSGKPRRGPNSKKRRKASHFLVVH 210


>AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 protein
           protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -3

Query: 355 CIYNERFH*GFVV*IKRGEFRRNQHTRHRRLSAVYLCVH 239
           C Y +RF+  ++   + G+ RR  +++ RR ++ +L VH
Sbjct: 172 CAYGDRFNPWYIELRRSGKPRRGPNSKKRRKASHFLVVH 210


>Z68215-7|CAA92453.1|  289|Caenorhabditis elegans Hypothetical
           protein C53B4.5 protein.
          Length = 289

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 190 EKPKSFGSVGVMNNYNCEHKDTLRKVGDGECAG 288
           E  K +G V  + +    H  T R+VG+G+C G
Sbjct: 56  EAKKLWGDVNRVPDMVMAHNRTARQVGNGQCEG 88


>U61957-3|AAX55702.1|  395|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 49, isoform a protein.
          Length = 395

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 279 VCWFRRNSPLLI*TTKPQWNLSLYIQNMTFFSN 377
           +CWF   + LL+   KP+ N   YI  + FFS+
Sbjct: 282 LCWFPLETYLLLNELKPEINGWKYINLVFFFSH 314


>U61957-2|AAX55703.1|  386|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 49, isoform b protein.
          Length = 386

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 279 VCWFRRNSPLLI*TTKPQWNLSLYIQNMTFFSN 377
           +CWF   + LL+   KP+ N   YI  + FFS+
Sbjct: 273 LCWFPLETYLLLNELKPEINGWKYINLVFFFSH 305


>CU457741-7|CAM36348.1|  710|Caenorhabditis elegans Hypothetical
           protein C42C1.7 protein.
          Length = 710

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 76  RPDKPDLKQLKAEAARKKACLHDCTNVKFEPICASKNGEKPKSFGSVGVM 225
           +PD   L +L+ EA  K+ C   C  + +EP+  +K   + + F + G +
Sbjct: 634 QPDTYKLARLRTEAIVKE-CGSKCEMIDYEPLLFNKTSNRFEFFDNRGFL 682


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,319,006
Number of Sequences: 27780
Number of extensions: 226244
Number of successful extensions: 507
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)