Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_L02
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    30   0.20 
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...    29   0.60 
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    27   1.8  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    26   3.2  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    26   3.2  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    26   4.2  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    25   5.6  
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.8  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   9.8  

>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 274 GLHEFRNNIGFRVLVRVFLQHIFPRDFLDVLVHSWL 167
           G H+FR N+G    +R FL  IF  D   + + ++L
Sbjct: 69  GYHQFRKNVGKEAKLRAFLPQIFGGDSWKLAIPAFL 104


>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = +2

Query: 77  FDVVIGKDSLMKADVKMKEICIMKLLNYVLQPTVYEDIKEVAREYMLEENTDKYSKSDVV 256
           F  VIGKDS   +    K +  +K + YV  P+   +I +     +L EN  K   S V 
Sbjct: 60  FGFVIGKDSSQISQKVAKSVNDLKKVIYVENPSYEHNIPDQIAN-VLFENVKKNEISHVF 118

Query: 257 TKFMETFKMGMLPR 298
           +    T   G++PR
Sbjct: 119 SAH-STVGKGVMPR 131


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 92  GKDSLMKADVKMKEICIMKLLNYVLQPTVYEDIKEVAREYMLEENTDKYS 241
           G  SL+ A       C+  LL+Y   P++    +  A EY+LE +   +S
Sbjct: 369 GDTSLLIAARNGAMDCVNSLLSYNANPSIPNRQRRTASEYLLEADKKPHS 418


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 170 PTVYEDIKEVAREYMLEENTDKYSKSDVVTKFMETF 277
           PT+Y+D K V ++ +L    D    + V+  +M  F
Sbjct: 379 PTIYDDYKFVTKKELLNLGLDHLVGTGVIRAYMHGF 414


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 268 HEFRNNIGFRVLVRVFLQHIFPRDFLDVLVHS 173
           H  ++N   R+   VFLQ  F   F D LVH+
Sbjct: 97  HRHKSNTFARLTAAVFLQKGFKTYFFDHLVHT 128


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 341 PVPFATHLCERRPHHAVACPF*RSP 267
           PVPFAT L +  PH  +  P   +P
Sbjct: 123 PVPFATRLLQSTPHRQLFPPTPSTP 147


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 207 NICWRKTRTSTRNPMLLRNSWRPS 278
           +IC  KT T T+  M+ R  W PS
Sbjct: 364 DICSDKTGTITQGKMITRRVWIPS 387


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 465 LPQV*LRRYYSTRSGR 512
           +PQ  LRRYYSTR+ +
Sbjct: 147 VPQKSLRRYYSTRTAQ 162


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 243 FEYLSVFSSSIYSLATSLMSSYTV 172
           FEY+S  S  IY L  +L+  YT+
Sbjct: 555 FEYVSRLSQYIYLLRIALVRLYTI 578


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,143,621
Number of Sequences: 5004
Number of extensions: 43570
Number of successful extensions: 130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)