Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_L01
(613 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 34 0.019
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce... 27 1.6
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch... 27 1.6
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 27 2.1
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 27 2.1
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 2.8
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 27 2.8
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 27 2.8
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 3.7
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 26 4.9
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.9
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 4.9
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 25 8.6
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 25 8.6
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 33.9 bits (74), Expect = 0.019
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 319 TLCTLSRQRSGSVRTILTMIGSTSLDSFTISERLWPSTRSRNGAWSVTH 465
T C Q S T + S + S T+S WP+T +GAWS T+
Sbjct: 33 TACMGQTQNSERFSTASRSVKSGLISSSTVSAWTWPATLLSSGAWSYTY 81
>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 8 RENMKIKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPIKMRVR 160
+ N KI P SV+DP+ + E+ + R VD+N P+ R R
Sbjct: 147 KNNEKITPSMYDSVVDPAPPMPDHEQDVKSEVAKLRSEIVDQNLPLFYRYR 197
>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 287
Score = 27.5 bits (58), Expect = 1.6
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Frame = +2
Query: 11 ENMK--IKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPIKMR---VRKTYYD 175
EN+K IK PV+ P L +E+YE F D EN IK R + + +Y+
Sbjct: 54 ENLKKNIKVLVPVNEK-PQKLDGKQEEYEIIVKLFFLD---GENIDIKKREETLSQVFYN 109
Query: 176 MHTNMTVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLVDESDP 304
+H +DFV + ++ K + + ++ D +DE P
Sbjct: 110 LHMLFGIDFVSTLVVSFPHITFLKESGNSSSNEIYDSIDEIPP 152
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -1
Query: 130 IHRVITERFQRFVLVFLLWSE*KRRVHNGHRGFWF 26
IH++I++R Q+F FL W E + V+ + G +F
Sbjct: 35 IHQLISQRNQKFQANFLEW-ENSKLVYRRYAGLYF 68
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 27.1 bits (57), Expect = 2.1
Identities = 20/84 (23%), Positives = 35/84 (41%)
Frame = +2
Query: 8 RENMKIKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPIKMRVRKTYYDMHTN 187
R+N+ P P + PS +RP D P + D ++ T + ++
Sbjct: 393 RKNINFTPLPPSTPSKPSTFVRPHSSSTDSPPSPSTPSNT-QTDSYFIQRENTPTNHNSI 451
Query: 188 MTVDFVKGKMDNWLKFNHFKSTIK 259
T+ K MD +L+F+ S +K
Sbjct: 452 PTIQLEKSSMD-FLRFDPPPSAVK 474
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 425 GHNLSEIVNESNEVEPIIVRMVLTDPLRCLESVHNVRQVS-PD 300
G++LSE +N N + + ++ DP+R +H + S PD
Sbjct: 936 GNHLSEKLNSDNHIPKALQKLDSADPIRKPSLLHTSKSYSNPD 978
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/46 (23%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +2
Query: 65 LLRPE-EKYEDKPLEAFRDYTVDENDPIKMRVRKTYYDMHTNMTVD 199
+++P+ +K++ + LEA ++ ++++ M + ++ +M TNM +D
Sbjct: 674 VVKPKRKKHKKQRLEAGEEFDSEDDNSDDMDIEESEEEMDTNMVID 719
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 26.6 bits (56), Expect = 2.8
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +3
Query: 111 SVITRWMKTIRSRCESVKPIMICTR 185
+VIT+W+ + S C VK +++ +
Sbjct: 102 NVITKWLPEVSSNCPGVKLVLVALK 126
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 221 NWLKFNHFKSTIKDALIKLNDLVDESD 301
N LKF H ST+ D + +D VD D
Sbjct: 609 NLLKFVHLVSTVDDLQVVEDDAVDRHD 635
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -3
Query: 449 APLRLLVEGHNLSEIVNESNEVEPIIVRMVLTDPLRCL--ESVHNV 318
A LR V S ++NE+NE + I+ ++L+ LR L E+ N+
Sbjct: 666 ARLRRSVSNKEDSSLINEANEEKEIVTNLLLS-ALRALISENAENI 710
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/46 (21%), Positives = 21/46 (45%)
Frame = +2
Query: 11 ENMKIKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPIK 148
++ K+ P + +D L P +Y+ P + DY +P++
Sbjct: 148 DSQKLSPGKEKNTLDLKHCLLPSPEYKAPPAKKPEDYEASPGEPVE 193
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -1
Query: 613 PKIPSNSSSPQLGSYIPXXXXXXXXXXXXXXXXXXSP*TIDLP-HLHPTAN 464
P IPS+SS+P + S IP P +D P HL P ++
Sbjct: 120 PSIPSSSSTPSISS-IPHTTSSVSNDIPSVLGSSDHPIDLDNPEHLTPPSS 169
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 11 ENMKIKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYT 124
E + PE P+S+ + +L + YE +E + YT
Sbjct: 606 EQGDVIPEKPMSIKERMNMLMTKTDYEKPKVEGYGRYT 643
>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 676
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -3
Query: 437 LLVEGHNLSEIVNESNEVEPIIVRMVLTDPLRCLESVHNVRQVSPD 300
+ EGH L +VN E+E + V + D E + ++++ P+
Sbjct: 172 MYTEGHLLKTLVNPLKEIESLEVIIYRNDAKE--EDIKTIQEIRPN 215
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,664,734
Number of Sequences: 5004
Number of extensions: 56305
Number of successful extensions: 162
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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