Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_L01
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0471 + 21130839-21130869,21131013-21131127,21132228-211323... 118 4e-27
01_06_1183 - 35176780-35177266,35179631-35181093 31 0.54
01_01_0972 + 7672048-7672390,7672546-7672709,7672864-7672961,767... 31 0.72
01_01_1184 - 9430623-9430658,9430945-9431013,9431104-9431270,943... 30 1.3
11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415 30 1.7
06_01_1085 - 8886868-8887556,8887629-8888574 29 3.8
05_03_0169 - 9123684-9124823,9125408-9125594,9126379-9126476,912... 29 3.8
11_06_0437 - 23533218-23536382 28 5.1
01_01_0473 - 3478660-3480338,3480507-3480609 28 6.7
10_01_0132 - 1601421-1601657,1601761-1601922,1602812-1603721,160... 27 8.9
05_03_0168 - 9116648-9117775,9118699-9118885,9119724-9119821,911... 27 8.9
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365... 27 8.9
>06_03_0471 +
21130839-21130869,21131013-21131127,21132228-21132309,
21132444-21132648,21133237-21133296,21133420-21133472,
21133589-21133711,21133844-21133913,21134012-21134090,
21134172-21134253,21134272-21134310
Length = 312
Score = 118 bits (284), Expect = 4e-27
Identities = 55/98 (56%), Positives = 68/98 (69%), Gaps = 3/98 (3%)
Frame = +3
Query: 309 NLPNIVHAFQTAERIREDHPDDDWFHLIGLIHDLGKVM---AFYEEPQWCVVGDTFAVGC 479
++P I H QTAE IR+D PD+DW HL GLIHDLGKV+ +F E PQW VVGDTF VGC
Sbjct: 113 DMPQIEHLLQTAEAIRKDFPDEDWLHLTGLIHDLGKVLLHPSFGELPQWSVVGDTFPVGC 172
Query: 480 KWGKSIVYGDDSFKDNPDTYNPKYNTEYGMYEPNCGLE 593
+ + V+ FK+NPD NPK NT++G Y CGL+
Sbjct: 173 AFDECNVH-FKYFKENPDYLNPKLNTKFGAYSEGCGLD 209
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/67 (31%), Positives = 35/67 (52%)
Frame = +2
Query: 107 AFRDYTVDENDPIKMRVRKTYYDMHTNMTVDFVKGKMDNWLKFNHFKSTIKDALIKLNDL 286
AFR+Y + K V + Y H N T DFV+ + + + + + I + + LN+
Sbjct: 47 AFRNYEAESER--KETVEEFYRVNHINQTYDFVRRMREEYGRVDKTEMGIWECIELLNEF 104
Query: 287 VDESDPD 307
+D+SDPD
Sbjct: 105 IDDSDPD 111
>01_06_1183 - 35176780-35177266,35179631-35181093
Length = 649
Score = 31.5 bits (68), Expect = 0.54
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 410 EIVNESNEVEPIIVRMVLTDPLRCLESVHNVRQVSPDR 297
EIV E +E I+V + + DP C E + ++ Q DR
Sbjct: 188 EIVPERERLEEILVEVGINDPASCSEEIESLEQEIGDR 225
>01_01_0972 +
7672048-7672390,7672546-7672709,7672864-7672961,
7673040-7673361,7674021-7675220
Length = 708
Score = 31.1 bits (67), Expect = 0.72
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 382 STSLDSFTISERLWPSTRSRNGAWSVTHSPSDVNGVN 492
S L S + S +WP+ +++ G W SP+ G+N
Sbjct: 270 SMLLGSISSSGFIWPALQAKQGEWYTDPSPTSFKGIN 306
>01_01_1184 -
9430623-9430658,9430945-9431013,9431104-9431270,
9431596-9431693,9431790-9431929,9432911-9433120,
9434314-9434832
Length = 412
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = -1
Query: 151 HLDRIVFIHRVITERFQRFVLVFLLWSE 68
HLDR +++H+V+T R +++ L++SE
Sbjct: 164 HLDRYLYVHKVLTCRLGSALMLSLIYSE 191
>11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415
Length = 1490
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/74 (29%), Positives = 31/74 (41%)
Frame = +1
Query: 250 DNKGCSHQAERFGR*IRSGLTCRTLCTLSRQRSGSVRTILTMIGSTSLDSFTISERLWPS 429
+N C E +R GL+C + LSR +G + L I F + E
Sbjct: 977 NNSPCRRITECIVSLLRLGLSCSQVLPLSRTPTGDIIDELNAIKQNLSGLFPVCE----G 1032
Query: 430 TRSRNGAWSVTHSP 471
R R+ A +VTH P
Sbjct: 1033 RRRRHMATTVTHPP 1046
>06_01_1085 - 8886868-8887556,8887629-8888574
Length = 544
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +1
Query: 241 LQVD--NKGCSHQA-ERFGR*IRSGLTCRTLCTLSRQR 345
LQVD N G +HQ R G G TCR+ CT R+R
Sbjct: 326 LQVDRMNNGRAHQEPSRNGESASRGETCRSSCTRRRRR 363
>05_03_0169 -
9123684-9124823,9125408-9125594,9126379-9126476,
9127124-9127182,9128748-9129081
Length = 605
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 418 LWPSTRSRNGAWSVTHSPSDVNGVN 492
L+P +++G W T SPS+++G+N
Sbjct: 199 LYPYLETKHGEWYQTDSPSNLDGLN 223
>11_06_0437 - 23533218-23536382
Length = 1054
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 366 PDDDWF-HLIGLIHDLGKVMAFYEEPQWCVVGD 461
PD F H+ IHDL + +AF+ Q C VGD
Sbjct: 505 PDGSHFDHIRCKIHDLLRQLAFHLSRQECFVGD 537
>01_01_0473 - 3478660-3480338,3480507-3480609
Length = 593
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 230 KFNHFKSTIKDALIKLNDLVDESDPD 307
K++H KST++ +IKL D+V + D
Sbjct: 264 KYSHDKSTLETEIIKLQDIVKNFEGD 289
>10_01_0132 -
1601421-1601657,1601761-1601922,1602812-1603721,
1604587-1604651,1604704-1604746,1605086-1605128,
1605874-1605955,1606270-1606464,1606567-1606721,
1611207-1611435,1611538-1611693,1612539-1613476,
1614946-1614967
Length = 1078
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 89 EDKPLEAFRDYTVDENDPIKMRVRKTYYDMHTNMT-VDFVKGKMDNWLKFNHFKSTI 256
ED PLE D++DP+ RV K + D + MT +++ D+W + F+ +
Sbjct: 530 EDDPLEVTCLEDDDDDDPLVDRVEKFFRD--SGMTSLEYPAAFYDSWRVLSEFQDLL 584
>05_03_0168 -
9116648-9117775,9118699-9118885,9119724-9119821,
9119948-9120114,9122242-9122578
Length = 638
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 418 LWPSTRSRNGAWSVTHSPSDVNGVN 492
L+P ++ G W T SP+ +NG N
Sbjct: 236 LYPFLETKRGQWYQTDSPTSLNGQN 260
>03_05_0432 -
24231984-24233048,24233391-24235160,24235261-24236582,
24236668-24237013
Length = 1500
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -1
Query: 301 IGFIDQIVQLDESILYCRLEVVEFQPIIHFTLDEINC 191
IG + +++ L+E Y L+ ++ I+H L EINC
Sbjct: 701 IGSVLKVLHLEEK--YESLDQMKLDSIVHLILHEINC 735
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,171,311
Number of Sequences: 37544
Number of extensions: 354747
Number of successful extensions: 849
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -