Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_K24
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...   239   1e-64
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...   239   1e-64
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...   239   1e-64
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||...   124   7e-30
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    29   0.49 
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    26   3.5  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   4.6  
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    25   6.1  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    25   8.0  

>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score =  239 bits (586), Expect = 1e-64
 Identities = 116/126 (92%), Positives = 121/126 (96%)
 Frame = +3

Query: 108 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 287
           MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 288 LLIRKLPFQRLVREIAQDFKTDLRIQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 467
           LLIRKLPFQRLVREIAQDFKTDLR QS+AIGALQEA EAYLV LFEDTNLCAIH KRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120

Query: 468 MPKDIQ 485
            PKD+Q
Sbjct: 121 QPKDMQ 126


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score =  239 bits (586), Expect = 1e-64
 Identities = 116/126 (92%), Positives = 121/126 (96%)
 Frame = +3

Query: 108 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 287
           MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 288 LLIRKLPFQRLVREIAQDFKTDLRIQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 467
           LLIRKLPFQRLVREIAQDFKTDLR QS+AIGALQEA EAYLV LFEDTNLCAIH KRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120

Query: 468 MPKDIQ 485
            PKD+Q
Sbjct: 121 QPKDMQ 126


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score =  239 bits (586), Expect = 1e-64
 Identities = 116/126 (92%), Positives = 121/126 (96%)
 Frame = +3

Query: 108 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 287
           MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 288 LLIRKLPFQRLVREIAQDFKTDLRIQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 467
           LLIRKLPFQRLVREIAQDFKTDLR QS+AIGALQEA EAYLV LFEDTNLCAIH KRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120

Query: 468 MPKDIQ 485
            PKD+Q
Sbjct: 121 QPKDMQ 126


>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 120

 Score =  124 bits (299), Expect = 7e-30
 Identities = 68/111 (61%), Positives = 85/111 (76%), Gaps = 10/111 (9%)
 Frame = +3

Query: 183 ARKSAPSTGG--VKKPH--RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF-- 344
           A+KS  +  G  + +P   RYRPGT ALREIR+YQ+ST+LLI++LPF R+VREI+ +F  
Sbjct: 2   AKKSLMAEPGDPIPRPRKKRYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVA 61

Query: 345 --KTD--LRIQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 485
              TD  LR QS A+  LQEA+EA+LV LFEDTNLCAIHAKRVTIM +D+Q
Sbjct: 62  NFSTDVGLRWQSTALQCLQEAAEAFLVHLFEDTNLCAIHAKRVTIMQRDMQ 112


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 28.7 bits (61), Expect = 0.49
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
 Frame = +3

Query: 213 VKKPHRYRPGTVALRE-IRRYQKSTELLIRKLPFQRLVREIAQ--DF----KTDLRIQSA 371
           + + HR +    +L E + +++ S  LLI   P Q  +RE+A   DF    K ++R +  
Sbjct: 507 IDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIR-EEI 565

Query: 372 AIGALQEASEAYLVGLFE 425
            + A  E  EAY+  L E
Sbjct: 566 NLEAPDEEQEAYIRSLQE 583


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 249 ALREIRRYQKSTELLIRKLPFQR 317
           A RE+++ ++  EL++  LPFQR
Sbjct: 340 APREVKQIEQPKELVLNLLPFQR 362


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 355 FVSSLLPLALCKRPVKPIWWVCLKTPTFAPS 447
           F S+  PL    + +  I WVC+ T  FA S
Sbjct: 671 FTSNFAPLKFDNQALSVIIWVCVFTCKFAES 701


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 469 IMVTRLAWMAQRLVSSNRPTR 407
           I  T   W A RLV+ N PTR
Sbjct: 412 ITETNSNWFAHRLVAENDPTR 432


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 195 APSTGGVKKPHRYRPGTVALREIRRY 272
           APS  G K P    P T+ + EIRR+
Sbjct: 25  APSGLGWKSPSLAEPFTLPISEIRRF 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,081,729
Number of Sequences: 5004
Number of extensions: 40474
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)