Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_K22
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   3.6  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   3.6  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   3.6  
SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||...    25   8.3  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 409 LQLPLVCVNVIVKLTNRYSNFDY 341
           L+L  + +N + KL  ++SNFDY
Sbjct: 691 LELRGIVINSLCKLFTKFSNFDY 713


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -2

Query: 360 DIVTLTTDQRIGPKMASRKCIH--VQYVSNKNARGLAPYCDVIANDKQNYVGVYGSLKQ 190
           ++V LTT      K+ + +C+   +Q +SN    GL      ++ D+Q +VG Y +L +
Sbjct: 610 EVVQLTTFSDFQLKLKTLQCVLDILQSLSNWAESGLYLSRRGVSTDEQGFVGDYDALSR 668


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 344 LRIKELALRWRRANVSMYNTFQIRMRVDLR 255
           L +  L L+W++AN+S+     +   +DLR
Sbjct: 689 LSVPFLGLKWKQANMSIITQIYLNCSLDLR 718


>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 464 IIQFILLAT*ITIAKFLPFAIAIGLCKRNSKI 369
           ++ F+L    I+I ++LP AI IGL   + K+
Sbjct: 126 VLIFLLAYLRISIDRYLPIAIWIGLISLHPKL 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,797
Number of Sequences: 5004
Number of extensions: 52263
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)