Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_K15
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0295 - 22856879-22856983,22857987-22858143,22858332-228583...    32   0.38 
11_06_0440 - 23567567-23567952,23568192-23569875,23583064-23584215     31   0.88 
09_04_0075 - 14340458-14340551,14340643-14340814,14340895-143410...    30   1.5  
02_02_0539 - 11315788-11315841,11316620-11316700,11316728-11317711     27   8.2  

>03_05_0295 -
           22856879-22856983,22857987-22858143,22858332-22858396,
           22858539-22858643
          Length = 143

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 106 HVLHKP*YNNNA*VYVTTISIPRHILAWCVIESQRG 213
           H L  P Y N   VY T   +PRH + W +   Q G
Sbjct: 86  HTLPVPVYTNKKIVYTTKCQLPRHNIDWGLDRGQEG 121


>11_06_0440 - 23567567-23567952,23568192-23569875,23583064-23584215
          Length = 1073

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -2

Query: 127 IMVYVVRACFCVSSIQTRGPDRVHVTADERNYQSLCGRSQ 8
           +++ +V +C CVSS+    P R H T++      LC RSQ
Sbjct: 19  LIILIVSSCPCVSSL---APSRTHNTSEADRQALLCLRSQ 55


>09_04_0075 -
           14340458-14340551,14340643-14340814,14340895-14341066,
           14341617-14341811,14341886-14342053,14342150-14342335,
           14342797-14342881,14342896-14343206,14344222-14344569
          Length = 576

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = -1

Query: 554 VVRPRISRVQRREFRLPKYVV 492
           VVRP I+R++ R  RLPKY++
Sbjct: 449 VVRPSIARMRYRVIRLPKYLI 469


>02_02_0539 - 11315788-11315841,11316620-11316700,11316728-11317711
          Length = 372

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 499 YFGRRNSRRWTRLILGLTTVPPP 567
           +FGRR  R+WT L+   TT   P
Sbjct: 331 HFGRRGGRKWTHLVNEDTTYRTP 353


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,080,926
Number of Sequences: 37544
Number of extensions: 275383
Number of successful extensions: 489
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)