Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_K15
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77132-4|CAB00862.3|  536|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF083225-1|AAD03683.1|  536|Caenorhabditis elegans nuclear recep...    29   2.4  
Z93383-6|CAB07623.1|  283|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z81464-2|CAB03859.1|  249|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z77132-4|CAB00862.3|  536|Caenorhabditis elegans Hypothetical
           protein F54D1.4 protein.
          Length = 536

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +3

Query: 429 NKYTFTFTKISNMITFVRNECDYV-FR*TKLAALDPTNPRPN 551
           NKY   F K   +  F RN C Y  FR   L  ++P   RP+
Sbjct: 42  NKYVCRFEKNCEVTKFERNACRYCRFRKCLLVGMNPDYVRPD 83


>AF083225-1|AAD03683.1|  536|Caenorhabditis elegans nuclear receptor
           NHR-7 protein.
          Length = 536

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +3

Query: 429 NKYTFTFTKISNMITFVRNECDYV-FR*TKLAALDPTNPRPN 551
           NKY   F K   +  F RN C Y  FR   L  ++P   RP+
Sbjct: 42  NKYVCRFEKNCEVTKFERNACRYCRFRKCLLVGMNPDYVRPD 83


>Z93383-6|CAB07623.1|  283|Caenorhabditis elegans Hypothetical
           protein F54B8.6 protein.
          Length = 283

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 184 LVCVSEC*LSLRIPMHCCCIMVYVVRACFCVSSI 83
           LV V+   L++      CC+M+Y++ + FC   I
Sbjct: 3   LVKVASLILTIICSQSLCCLMIYLLYSIFCSKKI 36


>Z81464-2|CAB03859.1|  249|Caenorhabditis elegans Hypothetical
           protein C08E8.3 protein.
          Length = 249

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 5   YLTAPTKGLIISLVCRNMYAVRSARLYGTNTETCTYYINHNTTTMHRYT 151
           +L   T  +I++L C   +A        T TETC    N +TT +  YT
Sbjct: 90  FLEKHTMLIILALFCFGAFANAELVCKKTFTETCVETCNCSTTDIPLYT 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,985,298
Number of Sequences: 27780
Number of extensions: 252865
Number of successful extensions: 508
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)