Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_K13
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0081 - 40959279-40959375,40959463-40959589,40960138-409603... 33 0.28
04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391... 31 0.64
01_06_1655 + 38940790-38940864,38941245-38942057,38942149-389422... 30 1.5
12_02_0230 + 15973390-15974645,16002878-16003097 30 1.9
04_04_0962 + 29728983-29729034,29729622-29731369,29731656-297317... 29 3.4
11_01_0283 - 2095291-2095566,2095962-2096348,2096523-2096881,209... 29 4.5
12_01_0286 - 2127622-2127897,2128611-2128997,2129195-2129550,212... 28 5.9
09_03_0184 - 13205741-13206181 28 5.9
04_01_0121 + 1253201-1253584 28 5.9
10_07_0134 + 13289641-13290216,13290435-13290914 28 7.8
07_01_0551 - 4105721-4105774,4106090-4106159,4106880-4106945,410... 28 7.8
06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,558... 28 7.8
05_03_0027 + 7471834-7471984,7472359-7472423,7472811-7472828 28 7.8
>01_07_0081 -
40959279-40959375,40959463-40959589,40960138-40960339,
40962414-40963361
Length = 457
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +3
Query: 498 PVSDQRPPTDPIT-LKPEPETPM 563
PVSD PP P+T KPEPE P+
Sbjct: 17 PVSDDPPPPPPVTETKPEPEPPL 39
>04_01_0293 +
3881375-3883698,3906619-3907636,3907820-3908309,
3914729-3914823,3914854-3915213
Length = 1428
Score = 31.5 bits (68), Expect = 0.64
Identities = 33/130 (25%), Positives = 47/130 (36%), Gaps = 6/130 (4%)
Frame = +3
Query: 93 IPNQAPTTTKKPTMTVSAP---SAVPTVNTN-GNRGRYDTDPDDINSVFKIPTQAPGTVN 260
I NQAP PT A + P V N G+ G Y V +PTQ+ TV
Sbjct: 281 IRNQAPRPVAAPTQQQPAKREQGSKPVVCFNCGDPGHYADKCPKPRRVKVVPTQSNSTVP 340
Query: 261 PVXXXXXXXXXXXXESAPSAIVPTVNTNDTPC--ITKTGQEGVCVKDYFCNNNEMTNKDD 434
+ AP I+ T N P + +G + F N+ M +D
Sbjct: 341 ASKARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDL 400
Query: 435 TDNVDISGPN 464
+ +S P+
Sbjct: 401 RRPLMVSTPS 410
>01_06_1655 +
38940790-38940864,38941245-38942057,38942149-38942268,
38942883-38943566
Length = 563
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = +3
Query: 87 FKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAP 248
++I P T P S P+ P V+ + R D D D V +P +P
Sbjct: 101 YQITPAKPATVTAPAAAASLPAPPPPVSARERQRRRDVDDDKPAIVLPLPPPSP 154
>12_02_0230 + 15973390-15974645,16002878-16003097
Length = 491
Score = 29.9 bits (64), Expect = 1.9
Identities = 32/130 (24%), Positives = 46/130 (35%), Gaps = 6/130 (4%)
Frame = +3
Query: 93 IPNQAPTTTKKPTMTVSAP---SAVPTVNTN-GNRGRYDTDPDDINSVFKIPTQAPGTVN 260
I NQAP PT A + P V N G+ G Y V +P Q+ TV
Sbjct: 54 IRNQAPRPVAAPTQQQPAKREQGSKPVVCFNCGDPGHYADKCPKPRRVKVVPAQSNSTVP 113
Query: 261 PVXXXXXXXXXXXXESAPSAIVPTVNTNDTPC--ITKTGQEGVCVKDYFCNNNEMTNKDD 434
+ AP I+ T N P + +G + F N+ M +D
Sbjct: 114 ASKARVNHVAAAEAQDAPDVILGTFPVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDL 173
Query: 435 TDNVDISGPN 464
+ +S P+
Sbjct: 174 RRPLMVSTPS 183
>04_04_0962 +
29728983-29729034,29729622-29731369,29731656-29731742,
29732035-29732199,29732437-29732526,29732863-29733027,
29733124-29733418,29733550-29733764,29733879-29733947,
29734107-29734184,29734466-29734529,29734658-29734897,
29734985-29735124
Length = 1135
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +3
Query: 39 AQANANDIDLEEINSIFKIPNQAPTTTK--KPTM 134
++A AN I +E I K+P++APT T+ KP M
Sbjct: 892 SRAEANMISVERILQYTKLPSEAPTITEGSKPPM 925
>11_01_0283 -
2095291-2095566,2095962-2096348,2096523-2096881,
2097275-2097398,2097480-2097548,2098536-2098584,
2099185-2099299,2099823-2099872,2099969-2100106,
2101136-2101197,2102066-2102180,2103433-2103664,
2103748-2103826,2103925-2103993,2104079-2104171,
2104577-2104622,2105223-2105268,2105354-2105411,
2105577-2105615,2105712-2105783,2105930-2106021,
2106824-2106923
Length = 889
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +3
Query: 336 NTNDTPCITKTGQEGVCVKD---YFCNNNEMTNKDDTDNVDISGPNGGCSSFLDICCPVS 506
N + + + ++ + V D Y N EM+ ++++D S N S+ P+
Sbjct: 595 NEKPSAPVARADEDDIFVGDGVYYSVPNKEMSQSPVSEDMDESPHNHQKQSYFTEEKPIY 654
Query: 507 DQRPPTDPITLKPEP 551
PP+DP P+P
Sbjct: 655 GPIPPSDPAQAWPQP 669
>12_01_0286 -
2127622-2127897,2128611-2128997,2129195-2129550,
2129923-2130046,2130128-2130196,2131190-2131238,
2132222-2132336,2132854-2132903,2133000-2133137,
2134182-2134228
Length = 536
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 393 DYFCNNNEMTNKDDTDNVDISGPNGGCSSFLDICCPVSDQRPPTDPITLKPE 548
DY N EM++ ++++D S N S+ PV PP+DP P+
Sbjct: 264 DYSVPNKEMSHSPVSEDMDESPHNHQKQSYFTEEKPVYGPIPPSDPAQAWPQ 315
>09_03_0184 - 13205741-13206181
Length = 146
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = +3
Query: 429 DDTDNVDISGPNGGCSSFLDICCPVSDQRPPTDPITLKPEPETPMRVGCGW 581
++ VD G GG + D+ CP P T+ P P VG GW
Sbjct: 26 EEKAEVDDGGGGGGYARTPDLGCPYYYAPPKKVTTTMPPPPPAASAVG-GW 75
>04_01_0121 + 1253201-1253584
Length = 127
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 111 TTTKKPTMTVSAPS-AVPTVNTNGNRGRYDTDPDDINSVFKIPTQAP 248
TT K+ ++ PS A+P + T R T+ D +N+V+K Q P
Sbjct: 33 TTVKESIADLNLPSIAIPNLRTFQAMTRSVTNVDQVNAVYKAFLQPP 79
>10_07_0134 + 13289641-13290216,13290435-13290914
Length = 351
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = -2
Query: 601 PTPSGFAQPHPTR--IGVSGSGFRVIGSVGGL*SDTGQQISKNDEHPPLGP 455
P+P+ P P + +G++G+G + G S G DE PP P
Sbjct: 292 PSPAAVTTPPPPKMELGITGNGGGADAAAAGAGSFGGLLCGAVDEQPPFWP 342
>07_01_0551 -
4105721-4105774,4106090-4106159,4106880-4106945,
4106985-4107479,4107491-4107672,4107728-4108222
Length = 453
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Frame = +3
Query: 513 RPPTDPITLKPEPETPMRVGCGWANPEGVGIKT---TVEKDGETKF---GEFPWMVAILK 674
RPP P L+P + +R C + GI T VEK G F G+ W+++ K
Sbjct: 150 RPPAPPPGLRPHRRSDIRKICAAVDVADEGIVTVMLAVEKIGRVAFAAAGDDDWVISTWK 209
>06_01_0747 -
5587261-5587356,5587472-5587855,5588133-5588192,
5588428-5588484,5588663-5588800,5588901-5588966,
5589234-5589452,5589522-5589737,5589813-5589884,
5589952-5590205,5590356-5590525,5590840-5591029,
5592211-5592331,5592838-5592921,5593003-5593365,
5594530-5594724,5594938-5595933,5596329-5596370
Length = 1240
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 318 AIVPTVNTNDTPCITKTG-----QEGVCVKDYFCNNNEMTNKDDTDNVDISGPNGG 470
A+ TV T ++ +T T +EG+ D+ C + TNKD D+V+ N G
Sbjct: 598 ALQGTVFTGESKSLTDTQICSELEEGISSFDHCCPEGDNTNKDWADSVENGFHNCG 653
>05_03_0027 + 7471834-7471984,7472359-7472423,7472811-7472828
Length = 77
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 314 WGTFNGGWFLSSSGDGYRIDCSRSLRRYFENTVYIIG 204
W FNG +L S + CSR++ YF++ Y++G
Sbjct: 43 WDDFNGPNYLFSGECSMLMSCSRAV--YFKDARYLLG 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,326,581
Number of Sequences: 37544
Number of extensions: 470132
Number of successful extensions: 1366
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1362
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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