Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_K12
(396 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po... 29 0.35
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 28 0.46
SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.4
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 26 2.4
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 4.3
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom... 25 5.6
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 25 5.6
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 25 5.6
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 24 7.4
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 24 9.8
SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation protein... 24 9.8
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 24 9.8
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 24 9.8
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 24 9.8
>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 28.7 bits (61), Expect = 0.35
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Frame = +3
Query: 117 VERQKKVLSLFQDVDQVNVDDE-YYKIGKD-YDVEANIDD--YTNKKAVEEFL 263
VER+K++ +L Q D + ++DE YY + D Y+ + D +TN++ V+E +
Sbjct: 225 VERRKQIYTLAQKHDIIILEDEPYYYLQMDAYEGKPEAADKAFTNEQFVKELI 277
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 28.3 bits (60), Expect = 0.46
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +3
Query: 132 KVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDDYTNKKAVE 254
K L + + + YYK+ K Y +AN D K VE
Sbjct: 89 KTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVE 129
>SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 132
Score = 26.6 bits (56), Expect = 1.4
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +3
Query: 15 KTVLVLAGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKV----LSLFQDVDQVNVDDE 182
K ++ A +I +++ + +H +D V + QK+ S D D+ V DE
Sbjct: 28 KLIMKFADMIKNARNNEDNEDNHHINYEDESDVGTDEQKQQEGVNSSAVSDTDESAVSDE 87
Query: 183 YYKIGKDYDVEA 218
+ +I +++ ++A
Sbjct: 88 FMQIKEEFPMKA 99
>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 481
Score = 25.8 bits (54), Expect = 2.4
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 117 VERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDDYTNKKAVEEFLK 266
+ R+KK+L+L + D + V+DE Y + D +++ K FLK
Sbjct: 224 LSRRKKLLALARKYDIIIVEDEPYYFLQMEDYNGSLNPAQQKCDGSTFLK 273
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.0 bits (52), Expect = 4.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 350 EKSNSLFPKLLVEDGELIVLGKITDSVQFQEFFNSFL 240
+K N LF ++L+ + + L D QF+ +N FL
Sbjct: 1779 DKINDLFSEILMSFLKFLDLKDDIDKAQFKLLYNGFL 1815
>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 470
Score = 24.6 bits (51), Expect = 5.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 117 VERQKKVLSLFQDVDQVNVDDEYY 188
+ER+KK L+L + D + V+DE Y
Sbjct: 221 LERRKKFLTLAKKYDIIIVEDEPY 244
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 24.6 bits (51), Expect = 5.6
Identities = 7/23 (30%), Positives = 14/23 (60%)
Frame = -1
Query: 285 DNRFCTISRILQQLSYWCSHRCW 217
D + T++++ + LS W +R W
Sbjct: 239 DRKILTVNQVFEILSLWLEYRDW 261
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 24.6 bits (51), Expect = 5.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 150 QDVDQVNVDDEYYKIGKDYDVEANIDD 230
Q+V Q+N +DEY + + D EA ID+
Sbjct: 55 QNVMQMNFEDEYSEFSNE-DDEAEIDN 80
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 24.2 bits (50), Expect = 7.4
Identities = 7/17 (41%), Positives = 14/17 (82%)
Frame = +3
Query: 150 QDVDQVNVDDEYYKIGK 200
Q+ + N+DDEY+++G+
Sbjct: 65 QEETETNLDDEYHRLGE 81
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 23.8 bits (49), Expect = 9.8
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +3
Query: 63 VVSPKTYHFKTK-DVDAVFVERQKKVLSLFQDVDQVNVD 176
V+ PKT+H+K + F + QKK+ DV D
Sbjct: 234 VIEPKTFHYKNGISISMKFDKDQKKL--FINDVSTTKYD 270
>SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 246
Score = 23.8 bits (49), Expect = 9.8
Identities = 7/20 (35%), Positives = 16/20 (80%)
Frame = +3
Query: 126 QKKVLSLFQDVDQVNVDDEY 185
++++ SL ++++ N+DDEY
Sbjct: 189 RERLRSLADEIEEENIDDEY 208
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 23.8 bits (49), Expect = 9.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 126 QKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDDYTNK 242
Q+ + S+ D Q+++DD YKI E N D +K
Sbjct: 38 QEIIHSISPDTFQLDIDDILYKIYSKIPPEENNDALFSK 76
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 23.8 bits (49), Expect = 9.8
Identities = 11/45 (24%), Positives = 21/45 (46%)
Frame = +3
Query: 231 YTNKKAVEEFLKLYRIGYLPKYYEFSIFYQKLREEAIALFHLFYY 365
Y + K + + + + + +YY FS F + ++ I F YY
Sbjct: 119 YVDYKHLTSYNDVLALAIVEQYYRFSPFLLRALQKLIEKFEPEYY 163
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 23.8 bits (49), Expect = 9.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -2
Query: 368 SIVEQVEKSNSLFPKLLVEDGELIVLGKITDSVQFQEFF 252
SIV + +++P L ++ EL+ L + + FQE F
Sbjct: 556 SIVRSITFIYAVWPYLDIKSKELVTLQWLLEENTFQELF 594
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,510,649
Number of Sequences: 5004
Number of extensions: 28168
Number of successful extensions: 118
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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