Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_K12
         (396 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein...    32   0.17 
U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein...    32   0.17 
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    31   0.40 
AF016673-5|AAB66123.1|  684|Caenorhabditis elegans Hypothetical ...    30   0.52 
AC024804-8|AAF60745.1|  319|Caenorhabditis elegans Hypothetical ...    29   0.91 
AC024804-7|AAF60744.1|  322|Caenorhabditis elegans Hypothetical ...    29   1.2  
Z81479-10|CAB03945.2|  324|Caenorhabditis elegans Hypothetical p...    29   1.6  
U53155-4|AAC48265.1|  619|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AY552606-1|AAS89253.1|  324|Caenorhabditis elegans heparan sulfa...    29   1.6  
Z35663-8|CAA84728.1|  249|Caenorhabditis elegans Hypothetical pr...    27   3.7  
U64608-3|AAB04593.2|  349|Caenorhabditis elegans Serpentine rece...    27   3.7  
AF099919-4|AAC68791.1|  230|Caenorhabditis elegans Hypothetical ...    27   3.7  
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr...    26   8.5  
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p...    26   8.5  
AL034365-7|CAA22259.1|  421|Caenorhabditis elegans Hypothetical ...    26   8.5  
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.      26   8.5  
AF039041-8|AAB94189.2|  448|Caenorhabditis elegans Hypothetical ...    26   8.5  
AF016671-6|AAK73904.1|  979|Caenorhabditis elegans Adaptin or ad...    26   8.5  
AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or ad...    26   8.5  

>U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein
           1.0, isoform b protein.
          Length = 154

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
 Frame = +3

Query: 87  FKTKDVDAVFVE--RQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDDYTNKKAVEEF 260
           F+T++    +V+  + KKV S F +    +  D YY + + + V      +TN   V+E 
Sbjct: 37  FETEEEAQKYVDDRKPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEH 88

Query: 261 LKLYRIGYLPKYYEFSIFYQKLREEAIALFHLFYYAKD 374
           +K Y     P + ++S       EEAIA FH +Y  K+
Sbjct: 89  IKNYP---QPLHKKWSTL-----EEAIAYFHKYYEGKE 118


>U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein
           1.0, isoform a protein.
          Length = 155

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
 Frame = +3

Query: 87  FKTKDVDAVFVE--RQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDDYTNKKAVEEF 260
           F+T++    +V+  + KKV S F +    +  D YY + + + V      +TN   V+E 
Sbjct: 37  FETEEEAQKYVDDRKPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEH 88

Query: 261 LKLYRIGYLPKYYEFSIFYQKLREEAIALFHLFYYAKD 374
           +K Y     P + ++S       EEAIA FH +Y  K+
Sbjct: 89  IKNYP---QPLHKKWSTL-----EEAIAYFHKYYEGKE 118


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
 Frame = +3

Query: 141  SLFQDVDQVNVDDEYYKIGKDYDVEANIDDYT-----NKKAVEEFLKLYR--IGYLPKY 296
            S+  DV ++++DD+Y+ +G  +D +  +DD        + AV  F  L+R    +LP Y
Sbjct: 2542 SMEDDVQRLDLDDDYFDMGGPFDAQ-RMDDMIFPPSFGRPAVTSFADLFRDDFDFLPPY 2599


>AF016673-5|AAB66123.1|  684|Caenorhabditis elegans Hypothetical
           protein T06D4.4 protein.
          Length = 684

 Score = 30.3 bits (65), Expect = 0.52
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +3

Query: 6   QTMKTVLVLAGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLS---LFQDVDQVNVD 176
           Q M  +   +GL+  +QS ++   +  F  K++DA+  +  K+ L+   +F  +D V  D
Sbjct: 288 QKMAPMSTSSGLVRRIQSGILITNSSSFFGKNLDAIIQQTHKRTLANYLIFHFIDAVTFD 347


>AC024804-8|AAF60745.1|  319|Caenorhabditis elegans Hypothetical
          protein Y51H7BR.1 protein.
          Length = 319

 Score = 29.5 bits (63), Expect = 0.91
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +3

Query: 3  QQTMKTVLVLAGLIALVQSSVVSPKTYHF 89
          Q+T+K V++  G I L+ +S++S KT HF
Sbjct: 11 QKTLKNVILQMGHIELICTSLLSNKTKHF 39


>AC024804-7|AAF60744.1|  322|Caenorhabditis elegans Hypothetical
          protein Y51H7BR.2 protein.
          Length = 322

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +3

Query: 3  QQTMKTVLVLAGLIALVQSSVVSPKTYHF 89
          Q+T+K V++  G I L+ +S++S KT HF
Sbjct: 11 QKTLKNVILHMGHIELICASLLSNKTKHF 39


>Z81479-10|CAB03945.2|  324|Caenorhabditis elegans Hypothetical
           protein C34F6.4 protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = +3

Query: 84  HFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKD-YDVEANIDDYTNKKAVEEF 260
           HF + D +   +   KK +        +   DE YK+ ++ YD   N+ D   KKA    
Sbjct: 244 HFDSLDANRAHLRYTKKKIPPNDQTLSMIRRDEVYKMEREFYDFINNLFDAVFKKATNGI 303

Query: 261 LKLYRIGYLPKYYEF 305
            K   +  LP  Y F
Sbjct: 304 SKADDLVKLPLQYHF 318


>U53155-4|AAC48265.1|  619|Caenorhabditis elegans Hypothetical
           protein ZC513.3 protein.
          Length = 619

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 309 WRTHSTWEDN-RFCTISRILQQLSYWCSHRC 220
           WRT +  E + +F  +SRIL+Q + W S  C
Sbjct: 542 WRTFAIREKSEKFPNVSRILRQKTSWVSKNC 572


>AY552606-1|AAS89253.1|  324|Caenorhabditis elegans heparan sulfate
           2O-sulfotransferase protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = +3

Query: 84  HFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKD-YDVEANIDDYTNKKAVEEF 260
           HF + D +   +   KK +        +   DE YK+ ++ YD   N+ D   KKA    
Sbjct: 244 HFDSLDANRAHLRYTKKKIPPNDQTLSMIRRDEVYKMEREFYDFINNLFDAVFKKATNGI 303

Query: 261 LKLYRIGYLPKYYEF 305
            K   +  LP  Y F
Sbjct: 304 SKADDLVKLPLQYHF 318


>Z35663-8|CAA84728.1|  249|Caenorhabditis elegans Hypothetical
           protein T04A8.9 protein.
          Length = 249

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 132 KVLSLFQDVDQVNVDDEYYKIGKDYDVEAN 221
           KVL L Q   Q ++   YYK+ K +  + N
Sbjct: 27  KVLGLAQSASQKDIKSAYYKLSKQHHPDTN 56


>U64608-3|AAB04593.2|  349|Caenorhabditis elegans Serpentine
           receptor, class v protein7 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -2

Query: 395 TLVEGFKVF-SIVEQVEKSNSLFPKLLVEDGELIVLGKITDSVQFQEFFNSFLIGVVIDV 219
           TL E F    S+V  V    S F  +L+   E+++L  + ++V    F+  F IG++IDV
Sbjct: 6   TLPEWFDPLESVVSTVFMLGS-FVTILLYFVEILILVTLRNTVYKGMFYQIFTIGIIIDV 64


>AF099919-4|AAC68791.1|  230|Caenorhabditis elegans Hypothetical
          protein F40G9.12 protein.
          Length = 230

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 8  NYEDCPSSSGAHCPRAIQCGVT 73
          NYE    +SG HCPR + CG T
Sbjct: 25 NYE----TSGDHCPRVLSCGHT 42


>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
            C35C5.1 protein.
          Length = 2962

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
 Frame = +3

Query: 75   KTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEY--YKIGKDYDVEANI---DDYTN 239
            K +  ++K VDA    +QK V+   Q V  +N  +EY   K+    D  A +    +Y+ 
Sbjct: 2272 KNFVSRSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEYAQKKVRNTKDSFATLFRDHEYST 2331

Query: 240  KKAVEEFL 263
            ++  EE L
Sbjct: 2332 RRTYEEQL 2339


>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
            protein C35C5.1 protein.
          Length = 2962

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
 Frame = +3

Query: 75   KTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEY--YKIGKDYDVEANI---DDYTN 239
            K +  ++K VDA    +QK V+   Q V  +N  +EY   K+    D  A +    +Y+ 
Sbjct: 2272 KNFVSRSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEYAQKKVRNTKDSFATLFRDHEYST 2331

Query: 240  KKAVEEFL 263
            ++  EE L
Sbjct: 2332 RRTYEEQL 2339


>AL034365-7|CAA22259.1|  421|Caenorhabditis elegans Hypothetical
           protein Y69E1A.7 protein.
          Length = 421

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = +3

Query: 150 QDVDQVNVDDEYYK-----IGKDYDVEANIDDYTNKKAVEEFLKLYR 275
           QD D V++D E  K     I    D+E  + +YT+KK + +   +++
Sbjct: 368 QDEDAVSLDSESDKQLKTMIDNMVDIENQLPEYTDKKQLSDIASIHQ 414


>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
          Length = 2962

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
 Frame = +3

Query: 75   KTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEY--YKIGKDYDVEANI---DDYTN 239
            K +  ++K VDA    +QK V+   Q V  +N  +EY   K+    D  A +    +Y+ 
Sbjct: 2272 KNFVSRSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEYAQKKVRNTKDSFATLFRDHEYST 2331

Query: 240  KKAVEEFL 263
            ++  EE L
Sbjct: 2332 RRTYEEQL 2339


>AF039041-8|AAB94189.2|  448|Caenorhabditis elegans Hypothetical
           protein W03F8.2 protein.
          Length = 448

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 273 RIGYLPKYYEFSIFYQKLREEAIALFHLFYYAKDFET 383
           +I  +P+  +FSI  +KLRE     +H F+  +D +T
Sbjct: 158 KISIVPEKEDFSILEKKLRE--FNFYHGFFPREDLQT 192


>AF016671-6|AAK73904.1|  979|Caenorhabditis elegans Adaptin or
            adaptin-related proteinprotein 5, isoform b protein.
          Length = 979

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 371  FSIVEQVEKSNSLFPKLLVEDGELIVLGKITDSVQ 267
            FSIVE+  K+ SLF + +  +   +++ K +D VQ
Sbjct: 920  FSIVEETPKAASLFGRTVGGEPICLLVKKTSDGVQ 954


>AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or
            adaptin-related proteinprotein 5, isoform a protein.
          Length = 1251

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 371  FSIVEQVEKSNSLFPKLLVEDGELIVLGKITDSVQ 267
            FSIVE+  K+ SLF + +  +   +++ K +D VQ
Sbjct: 1192 FSIVEETPKAASLFGRTVGGEPICLLVKKTSDGVQ 1226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,319,358
Number of Sequences: 27780
Number of extensions: 157667
Number of successful extensions: 536
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)