Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_K11
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0642 - 19174274-19174783                                         28   5.1  
04_03_0548 - 17035394-17035749,17035761-17036295,17036325-170364...    28   6.8  
01_06_0878 - 32669790-32669846,32670206-32670299,32670384-326704...    28   6.8  

>09_04_0642 - 19174274-19174783
          Length = 169

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 335 NNCDGLTSVFRVAIDECDRLWVMDTGKIGDTQHCPPQLLAFNL 463
           + CD +     VA  E  +LW M    IG T   P   ++F+L
Sbjct: 70  DQCDEIIDYLLVACPESRQLWWMALRAIGQTSSLPMNEVSFHL 112


>04_03_0548 -
           17035394-17035749,17035761-17036295,17036325-17036458,
           17037053-17037134
          Length = 368

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 429 CVSPILPVSITHSR-SHSSIATRNTDVSPSQLFPWLSCQ 316
           C +P  P     SR SH  +  + T + PS+L PW  C+
Sbjct: 274 CHTPQAPGKEEGSRVSHDHLLDQVTAIRPSRLRPWSKCK 312


>01_06_0878 -
           32669790-32669846,32670206-32670299,32670384-32670499,
           32670786-32671096,32672243-32672364,32672754-32672870,
           32672982-32673054,32673416-32673542,32673659-32673727,
           32673811-32674170,32674493-32674633
          Length = 528

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 322 MPGVVRVSDYSSLVIYSPQRHRPSFTKSRYCREYSRFIL 206
           MP     S++SS+ I  P   R  +T++RY +EYS  ++
Sbjct: 247 MPVYGEASNHSSVSIEEPDYSR--YTRARYMKEYSERVI 283


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,554,178
Number of Sequences: 37544
Number of extensions: 377931
Number of successful extensions: 856
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)