Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_K11
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr...    29   2.0  
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion...    29   2.0  
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion...    29   2.0  

>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
            presynaptic activity protein.
          Length = 1409

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
 Frame = +2

Query: 176  DVEVHYNKVGKNKSRIFTTIPRFSEGRPVTLGTIDNQGRIVG--YPDYSWHDNQGN---- 337
            D +VH +K    K R      + +  R    G ++ +GR +G  +P +    NQG     
Sbjct: 1271 DDKVHMHKFHTKKCRELYQCMKAAMERAAARGKVNVEGRALGGEFPVHDTETNQGGLLQV 1330

Query: 338  NCDGLTSVF 364
             CDG+  +F
Sbjct: 1331 RCDGVAVIF 1339


>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
            defective protein3, isoform b protein.
          Length = 1408

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
 Frame = +2

Query: 176  DVEVHYNKVGKNKSRIFTTIPRFSEGRPVTLGTIDNQGRIVG--YPDYSWHDNQGN---- 337
            D +VH +K    K R      + +  R    G ++ +GR +G  +P +    NQG     
Sbjct: 1271 DDKVHMHKFHTKKCRELYQCMKAAMERAAARGKVNVEGRALGGEFPVHDTETNQGGLLQV 1330

Query: 338  NCDGLTSVF 364
             CDG+  +F
Sbjct: 1331 RCDGVAVIF 1339


>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
            defective protein3, isoform a protein.
          Length = 1409

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
 Frame = +2

Query: 176  DVEVHYNKVGKNKSRIFTTIPRFSEGRPVTLGTIDNQGRIVG--YPDYSWHDNQGN---- 337
            D +VH +K    K R      + +  R    G ++ +GR +G  +P +    NQG     
Sbjct: 1271 DDKVHMHKFHTKKCRELYQCMKAAMERAAARGKVNVEGRALGGEFPVHDTETNQGGLLQV 1330

Query: 338  NCDGLTSVF 364
             CDG+  +F
Sbjct: 1331 RCDGVAVIF 1339


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,880,234
Number of Sequences: 27780
Number of extensions: 325347
Number of successful extensions: 829
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)