Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_K10
         (189 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   1.00 
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    23   5.3  
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    23   7.0  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    22   9.3  

>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 25.4 bits (53), Expect = 1.00
 Identities = 16/34 (47%), Positives = 25/34 (73%), Gaps = 4/34 (11%)
 Frame = +2

Query: 2   FKST*NRSGVNLRNS-NERTERF---IVIPAAYA 91
           + S+  +SG+ LRNS N+RTER+   I+IP+ Y+
Sbjct: 31  YLSSAKKSGI-LRNSYNQRTERYFTNIMIPSDYS 63


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 130 GP*GPRPSSLDIARVRRRNNDESLRSLIRVS 38
           GP  PRP++  ++R   R    SL+  ++ S
Sbjct: 570 GPLLPRPTTRPVSRGLSRGTSSSLQQKVKAS 600


>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 65  ISPFAHSSFAGLPLNG 18
           +   AH+ FAGLP +G
Sbjct: 435 VGDIAHAPFAGLPSSG 450


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 67  HRYSCGVRARYQAMKVADLTVPGGFHA 147
           HR++ G+    ++   AD  VP G ++
Sbjct: 370 HRHASGLELLERSADTADADVPSGLYS 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 633,174
Number of Sequences: 5004
Number of extensions: 8434
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 40798814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)