Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_K10
(189 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0289 - 7115045-7115867,7116373-7116929,7117327-7117544,711... 29 0.69
09_02_0122 + 4523782-4523935,4524483-4524535 27 2.1
06_01_1084 + 8883301-8883515,8883736-8884063,8884764-8885022,888... 27 2.8
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 26 4.9
12_01_0378 - 2946916-2947590 25 6.4
01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267 25 6.4
06_03_0176 - 17575155-17575761,17575935-17575972 25 8.5
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854... 25 8.5
>03_02_0289 -
7115045-7115867,7116373-7116929,7117327-7117544,
7117829-7117928,7118665-7118832
Length = 621
Score = 28.7 bits (61), Expect = 0.69
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 42 TRMSERRDSSLFLRRTRAISSDEGRGPHGPWWLSRVARVDVL 167
+R E FL + I S+E G H PW L + +V+ L
Sbjct: 338 SRKLEHSSEFSFLDKAAVILSNERGGSHDPWRLCTITQVEEL 379
>09_02_0122 + 4523782-4523935,4524483-4524535
Length = 68
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 78 LRRTRAISSDEGRGPHGPWWLSRVAR 155
+RRT A SS +G P WW+ +AR
Sbjct: 25 VRRTCAGSSCDGGPPTASWWVFELAR 50
>06_01_1084 +
8883301-8883515,8883736-8884063,8884764-8885022,
8885581-8885681
Length = 300
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +3
Query: 45 RMSERRDSSLFLRRTRAISSDEGRGPHGPWWLSRVARV 158
R R S RR+ + GRG G WW V R+
Sbjct: 240 RRGHVRRSEEARRRSLRTGENRGRGGGGAWWAGPVGRL 277
>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 60 RDSSLFLRRTRAISSDEGRGPHGPWWLSRVAR 155
+DS +F RTR +S + R GP+ + +V++
Sbjct: 1751 QDSGVFASRTRVLSLKDSRSFSGPFVVVKVSQ 1782
>12_01_0378 - 2946916-2947590
Length = 224
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 103 AMKVADLTVPGGFHASRASTSSDGVHF 183
++ A+ TVPG FH R ST+ + F
Sbjct: 106 SLGAANATVPGVFHQPRMSTTVVAIDF 132
>01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267
Length = 769
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +1
Query: 76 SCGVRARYQAMKVADLT-VPGGFHASRASTSSDGVH 180
+C + + D T +PGG +AS DGVH
Sbjct: 159 TCDSEGNFTIKEALDKTNLPGGLDTPQASRRPDGVH 194
>06_03_0176 - 17575155-17575761,17575935-17575972
Length = 214
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = +3
Query: 36 CETRMSERRDSSLFLRRTRAISSDEGRGPHGPWWLSRVA 152
C + R L LRR R RGP WW SR A
Sbjct: 64 CRVECNVARHRRLRLRRGRG-GRGARRGPATRWWSSRRA 101
>02_05_1273 +
35381626-35382486,35382567-35382691,35384851-35385450,
35385550-35385841,35386199-35386364,35386664-35386707,
35386866-35386979,35387171-35387290,35387541-35387626,
35388340-35388502
Length = 856
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 51 SERRDSSLFLRRTRAISSDEGRGPHGPWWLSRVARVDVLGRRA 179
S+ RDS + RR + + R P R AR+DV+ R A
Sbjct: 217 SQPRDSRVASRRDDTAAGERERRGEPPRLRGRQARLDVITRMA 259
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,296,141
Number of Sequences: 37544
Number of extensions: 63117
Number of successful extensions: 209
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 14,793,348
effective HSP length: 42
effective length of database: 13,216,500
effective search space used: 264330000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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