Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_K10
         (189 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41039-1|AAX88820.1|  297|Caenorhabditis elegans Hypothetical pr...    26   4.3  
U43375-6|AAA83623.2|  515|Caenorhabditis elegans Hypothetical pr...    25   7.5  
Z67880-1|CAA91794.1|  256|Caenorhabditis elegans Hypothetical pr...    25   9.9  
Z50872-7|CAJ55249.1| 1001|Caenorhabditis elegans Hypothetical pr...    25   9.9  
Z50872-6|CAH10768.1| 1039|Caenorhabditis elegans Hypothetical pr...    25   9.9  

>U41039-1|AAX88820.1|  297|Caenorhabditis elegans Hypothetical
           protein ZK867.2 protein.
          Length = 297

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 106 SLDIARVRRRNNDESLRSLIRVSQVYP*TVSRTL 5
           S+D   VRR N D  ++ LI+   +Y  TV   L
Sbjct: 192 SIDKNPVRRANKDTEVQDLIKKGGIYQSTVDSAL 225


>U43375-6|AAA83623.2|  515|Caenorhabditis elegans Hypothetical
           protein K09C4.5 protein.
          Length = 515

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 48  MSERRDSSLFLRRTRAISSDEGRGPHGPW 134
           ++ +R+S L   RTRA++ D    P G W
Sbjct: 486 LAYKRNSILNTSRTRALTFDHNLIPSGEW 514


>Z67880-1|CAA91794.1|  256|Caenorhabditis elegans Hypothetical
           protein C34E7.3 protein.
          Length = 256

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 123 HGPWWLSRVARV 158
           HG WW+ RVA++
Sbjct: 215 HGDWWIVRVAKM 226


>Z50872-7|CAJ55249.1| 1001|Caenorhabditis elegans Hypothetical
           protein C05D12.3c protein.
          Length = 1001

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 78  GITMNLSVRSFEFRRFTPERFHV 10
           G+TM+ ++R+F F  F    +H+
Sbjct: 400 GVTMHSTIRTFGFPEFQSMSYHI 422


>Z50872-6|CAH10768.1| 1039|Caenorhabditis elegans Hypothetical
           protein C05D12.3a protein.
          Length = 1039

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 78  GITMNLSVRSFEFRRFTPERFHV 10
           G+TM+ ++R+F F  F    +H+
Sbjct: 400 GVTMHSTIRTFGFPEFQSMSYHI 422


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,538,419
Number of Sequences: 27780
Number of extensions: 50990
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 231468760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)