Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_K07
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 31 0.11
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 27 1.7
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei... 27 3.0
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 27 3.0
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3... 26 4.0
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 26 5.2
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ... 26 5.2
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ... 25 6.9
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ... 25 6.9
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 25 9.1
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 9.1
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 31.5 bits (68), Expect = 0.11
Identities = 17/69 (24%), Positives = 35/69 (50%)
Frame = +1
Query: 127 KGLPRDGSNPSLIYGYGGFNINIQPTFSVTRNVFMQHFNGVVAIPNIRGGGEYGERWHNA 306
+G PR+ S+ L + +GG +N++ + +RN FN + + N+R G R +++
Sbjct: 568 RGAPRNNSSNDL-HAHGGMPVNMRGPRNTSRNNSSSEFNAQIPM-NLRNGPRNASRSNSS 625
Query: 307 GRLLNKQNV 333
L + +
Sbjct: 626 TDLFGQSGI 634
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 27.5 bits (58), Expect = 1.7
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = -2
Query: 521 NFWNRSMSNTPTCTMAAP*RSGRWLMQAATSKPP-LEPPCMVVRPGRVYPSRCRYSAAAW 345
+FWNR + + TMAA +S R AA P L P + P V R + + +
Sbjct: 406 DFWNRMLHRSHLSTMAALHKSQRSHDLAANEHAPILNPKNSALNPRLVTNDRVKVKSPSL 465
Query: 344 KSSNT 330
S+T
Sbjct: 466 IQSST 470
>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 460 DLYGAAIVQVGVLDMLRFQKFTIGYAWVSD-YGSSDNKTQFEYLLKYSPLHNIV 618
D+ + Q+G+++M T GY +SD + +S K F+ + L+N++
Sbjct: 342 DILAGCLDQIGIMEMKSLASSTGGYLVLSDSFTTSIFKQSFQRIFGRDSLNNML 395
>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -2
Query: 347 WKSSNTFCLFSKRPAL-CHRSPYSPPPLMFGIATTP 243
WK F FSK P + C + Y+ ++F + P
Sbjct: 4 WKKGKRFFRFSKEPVITCINTSYAGKEIIFDLIANP 39
>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 555
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 193 IQPTFSVTRNVFMQHFNGVVAIPNIRGGGE 282
I ++V+ N FN + PNI+G GE
Sbjct: 345 INEKYNVSDNTSWDRFNESILNPNIKGAGE 374
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 184 NINIQPTFSVTRNVFMQHFNGVVAIPNI 267
+I S T VF+Q+FNG++ +P +
Sbjct: 1233 SIGTASIISGTAFVFIQYFNGMIQLPGV 1260
>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 445 INQRPDLYGAAIVQVGVLDMLRFQKFTIGYA-WVSDYGSS 561
++ RPDLYG + V+ L F YA + + +G+S
Sbjct: 81 VDDRPDLYGPFWITTTVIQALFFSNSITEYARYATGHGTS 120
>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 546
Score = 25.4 bits (53), Expect = 6.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 394 LTTIQGGSNGGLLVAACIN 450
+TT Q GG+ +AACIN
Sbjct: 148 VTTYQLAVTGGIFIAACIN 166
>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 6.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 394 LTTIQGGSNGGLLVAACIN 450
+TT Q GG+ +AACIN
Sbjct: 148 VTTYQLAVTGGIFIAACIN 166
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 118 ISKKGLPRDGSNPSLIYGYGGFNINIQPT 204
IS G+P+ +NPS + G I++ PT
Sbjct: 325 ISAFGIPKTETNPSEVVAPGTIPISVLPT 353
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 445 INQRPDLYGAAIVQVGVLDMLRFQKFTIGYAWVSDYGSS 561
+N D + +AI + L R +K AW++DY S+
Sbjct: 794 LNTYNDYFNSAISENPTLKSDRSEKVAFYSAWITDYKST 832
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,180
Number of Sequences: 5004
Number of extensions: 50310
Number of successful extensions: 157
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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