Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_K06
(485 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 29 0.49
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 27 1.5
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe... 26 2.6
SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyce... 26 2.6
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 26 3.5
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 25 6.1
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr... 25 8.0
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 25 8.0
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 25 8.0
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 25 8.0
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 28.7 bits (61), Expect = 0.49
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -1
Query: 302 PMLQMQRLGPEQSPLGHPPAQRGLHLLSVRSIEYPGLQTH*LPSVQTPLMHGSEH 138
P+L +R+ E + +Q +LL + I+YP LPS LMH H
Sbjct: 181 PVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPSQAELLMHDHCH 235
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 1.5
Identities = 11/36 (30%), Positives = 14/36 (38%)
Frame = +1
Query: 136 ECSEPCINGVCTEGNQCVCNPGYSMDLTDRRCKPRC 243
+C E C N C +G C G D C +C
Sbjct: 330 DCGEDCENNPCCDGKTCKLTKGSLCDDQQDACCYQC 365
>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 746
Score = 26.2 bits (55), Expect = 2.6
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +1
Query: 283 LCICNMGYHKDTSVKGRAVCVKRIRRSLNYFLSKK 387
+CICN+ Y KD + + + + +L +++K+
Sbjct: 690 VCICNIVYSKDQEIFNKFIKTPKAVETLRTYITKQ 724
>SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 213
Score = 26.2 bits (55), Expect = 2.6
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 98 EAMLTDKTHNVSLNVLNRASMEFARKAINVSAIPDI 205
E + T H V+L+++N+ E R + +IP I
Sbjct: 70 EELQTGSVHQVALSIINKEQREEERYVFSTDSIPII 105
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.8 bits (54), Expect = 3.5
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +1
Query: 4 PRPDPFYQPHKPNQPDHHITPNRTNDLSSV 93
P D FY PH P + PN LS+V
Sbjct: 590 PLHDKFYVPHSPPKYTMETYPNNVLSLSTV 619
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 25.0 bits (52), Expect = 6.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 15 SVLPTS*TKPTRSSHNPQPHQRSVLGPR 98
S++P KPT+ H P + +L PR
Sbjct: 997 SIIPIKPNKPTKPDHLVAPRVKPLLPPR 1024
>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
2|||Manual
Length = 667
Score = 24.6 bits (51), Expect = 8.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 237 GLAPSIGKIHRISGIADTLIAFRANSIDARFRTFRETLCVLSV 109
GL I ISGI L A N++ + +FRE C +++
Sbjct: 31 GLETKYSIISIISGIFIGLTAALLNALASLLNSFREGYCTVNI 73
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 24.6 bits (51), Expect = 8.0
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 159 WSLHGRQSMCLQSRIFYGSYR*KVQAPLCRWMS 257
W LH ++ L +F G YR + P+C +S
Sbjct: 448 WRLHKLRNDSLIVDLFQGMYRSTLVCPVCNTVS 480
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 24.6 bits (51), Expect = 8.0
Identities = 10/26 (38%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Frame = +1
Query: 130 FPECSEPCI-NGVCTEGNQCVCNPGY 204
FP C N +C N C PGY
Sbjct: 364 FPSLCRTCPPNAICPSPNYVECKPGY 389
Score = 24.6 bits (51), Expect = 8.0
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +1
Query: 256 PNGLCSGPNLCICNMGY 306
PN +C PN C GY
Sbjct: 373 PNAICPSPNYVECKPGY 389
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 24.6 bits (51), Expect = 8.0
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +2
Query: 122 HNVSLNVLNRASMEFARKAINVSAIPDILWILPI 223
HNV + + +++ + A K ++ +I DIL +P+
Sbjct: 984 HNVDVQLTSKSLISLAEKRLDSFSINDILSQVPV 1017
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,137,182
Number of Sequences: 5004
Number of extensions: 47323
Number of successful extensions: 139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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