Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_K05
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    28   0.65 
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    27   0.86 
SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po...    25   3.5  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   6.1  
SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   6.1  

>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 27.9 bits (59), Expect = 0.65
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = -3

Query: 350 NEVGSIAYAATQVGIVNKFGEDSDVLYEVVADRPFMFFIQDEVTRQLLFTGRVS 189
           N+VG I  A   +GIV K G+ +     + AD     F    V+R LL+ GR+S
Sbjct: 773 NDVGMIQVANVGIGIVGKEGQQA----SLAADYSVKEF--SHVSRLLLWHGRIS 820


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 27.5 bits (58), Expect = 0.86
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +3

Query: 183 GFGDTPGEQQLPGDFVLDEEHERSIGHHLVEDVGIFSKLIYDTN 314
           G  +   EQ   GD ++   H + I     EDV  FS   YDTN
Sbjct: 519 GTREAVNEQIRKGDELMQRIHGKEISEMDGEDVSEFSDSDYDTN 562


>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 333

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -1

Query: 259 PIDRSCSSSRTKSPGNCCSPGVSPNPQSSGQLVNSKKKQI*PVHNLQFH 113
           PI  S S SRTKS  N  +  +SP      + V SK     P++ L+++
Sbjct: 280 PIPGSTSVSRTKSNLNALNKSLSPEQFKEAKEVLSKY----PIYGLRYN 324


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/53 (22%), Positives = 25/53 (47%)
 Frame = -3

Query: 380 HVLQTCGIEVNEVGSIAYAATQVGIVNKFGEDSDVLYEVVADRPFMFFIQDEV 222
           ++   CG   N+VG++  A   V ++N   ED   + E   ++  M   + ++
Sbjct: 817 YITLMCGDGTNDVGALKQAHVGVALLNASEEDMLEMQERARNQKLMGVYEKQI 869


>SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 168

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
 Frame = -1

Query: 298 SLEKIPTSSTRWWPIDRSCSSSRTKS----PGNCCSP----GVSPNPQSSGQLVNSKKKQ 143
           +LEK P +ST  W    +  S  T S    P +  SP    G+SP+   S   V+S +KQ
Sbjct: 93  TLEK-PIASTHRWLSKLTALSKSTNSTLSTPKSFHSPLQSRGISPSSAQSSAAVSSSRKQ 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,492,879
Number of Sequences: 5004
Number of extensions: 28598
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)