Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_K04
         (137 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...    25   1.4  
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...    25   1.8  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    24   2.4  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    24   2.4  
SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase Le...    24   3.2  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    24   3.2  
SPAC23C11.17 |||mitochondrial inner membrane protein involved in...    23   5.5  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    23   7.3  
SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces p...    23   7.3  

>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 26  ILGCIMSLMVAARAWSELLKRRKKVPALKDQVMPKNL 136
           + GCI+   +A  A + + +  + +P L D  +PK L
Sbjct: 97  VRGCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPKRL 133


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 26  ILGCIMSLMVAARAWSELLKRRKKVPALKDQVMPKNL 136
           + GCI+   +A  A + + +  + +P L D  +PK L
Sbjct: 97  VRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPKRL 133


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 10  HETIQDTRLHHVSNGGSSSMVRAAETEEE 96
           H+TI D  L   +NG    +V+A ++  E
Sbjct: 375 HKTIDDELLSGTANGNGRLLVKATKSPRE 403


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 55  GSSSMVRAAETEEEGSSPKGPGHAEES 135
           G+   + A++TEE  S+P  P   + S
Sbjct: 121 GNGKPIEASQTEESSSTPPSPATKKSS 147


>SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase
           Leu1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 137 EDSSA*PGPLGLEPSSSVS 81
           +++S  PG LGL PS+S+S
Sbjct: 253 DEASVIPGSLGLLPSASLS 271


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 959

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 37   HHVSNGGSSSMVRAAETEEEGSSPKGPGHAE 129
            H   N G+   ++  +T    SSP+  GH E
Sbjct: 923  HDFINWGAQQRLKHQQTSTAASSPQKTGHHE 953


>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
           potassium ion transport|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +1

Query: 4   IYHETIQDTRLHHVSNGGSSSMVRAAE--TEEE 96
           +YHET+ D     VSN     ++R  E   EEE
Sbjct: 412 LYHETVVDMPTKQVSNKERLEILREQEELIEEE 444


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 23  KILGCIMSLMVAARAWSELLKRRKKVPALKDQVM 124
           KI+G    L      WS  ++R  K  AL+D  M
Sbjct: 566 KIVGSPCLLTTGQYGWSANMERIMKAQALRDTSM 599


>SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 1   RIYHETIQDTRLHHVSNGGSSSMVRAAETEEEGSSPKGPG 120
           R++  T     L  VSN  SSS+  ++E + E    +G G
Sbjct: 229 RVHTSTASVIVLPQVSNDESSSLYDSSEVKIEVMRSRGAG 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.302    0.120    0.332 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 561,130
Number of Sequences: 5004
Number of extensions: 6962
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 26
effective length of database: 2,232,374
effective search space used: 42415106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)