Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_K04
         (137 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1824 - 40146757-40147648,40150119-40150441                       26   3.7  
10_08_0885 - 21290394-21291347                                         26   4.8  
02_02_0146 - 7171656-7172044,7172383-7175008                           26   4.8  
07_01_0183 + 1297445-1297796,1297896-1298424,1298548-1298630,129...    25   6.4  

>01_06_1824 - 40146757-40147648,40150119-40150441
          Length = 404

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 135 RFFGMTWSFRAGTFFLRFSSSDHARAATIRDMMQPS 28
           RF GM  +    TF       D A AA + +++QP+
Sbjct: 61  RFLGMISALDIATFVAASGVGDRAMAAVVGEVVQPN 96


>10_08_0885 - 21290394-21291347
          Length = 317

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 52  GGSSSMVRAAETEEEGSSPKG 114
           GG SS+V+  E++ E S P+G
Sbjct: 59  GGESSVVQDGESDTESSPPRG 79


>02_02_0146 - 7171656-7172044,7172383-7175008
          Length = 1004

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 5   SIMKLFKILGCIMSLMVAARAWSELLKRRK 94
           SI  +  IL CI    VA   W  LL+R+K
Sbjct: 630 SIRAILVILPCITLASVAITGWLLLLRRKK 659


>07_01_0183 +
           1297445-1297796,1297896-1298424,1298548-1298630,
           1298901-1298989,1299091-1299164,1300196-1300246,
           1300439-1300515,1302199-1302863
          Length = 639

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 22  QDTRLHHVSNGGSSSMVRAAETEEEGSSPKGPG 120
           Q  +  H+S   +SS+V +     EGS  +G G
Sbjct: 546 QQQQQQHMSMSAASSLVTSLSNSREGSPDRGGG 578


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.302    0.120    0.332 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,132,569
Number of Sequences: 37544
Number of extensions: 55765
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 14,793,348
effective HSP length: 26
effective length of database: 13,817,204
effective search space used: 262526876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)