Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_K03
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330     28   1.0  
01_01_0106 + 788967-789555,790139-790162,790339-791411                 29   3.1  
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788...    27   9.4  
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257...    27   9.4  
02_01_0401 + 2927581-2927669,2927795-2927921,2928354-2928437,292...    27   9.4  

>03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330
          Length = 380

 Score = 27.9 bits (59), Expect(2) = 1.0
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 421 NGISGNIGLNVDGNTERLVVESWLTNLEVVWVTS 320
           NG +     +  G T+R+++ SWL+ LE+ + T+
Sbjct: 224 NGFTEAPETSNSGQTKRVLLSSWLSTLELAYTTA 257



 Score = 21.4 bits (43), Expect(2) = 1.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 289 VSGIKLAIVKECD*FLNDNIIDFNADEMKFL 197
           VSG ++A+  +    L+ N++  + DEM  L
Sbjct: 298 VSGTRIALGDDGSIALSRNVVVLHVDEMLLL 328


>01_01_0106 + 788967-789555,790139-790162,790339-791411
          Length = 561

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 353 PRLNHKPFSVTIDVESDIATDA--VIKIFLGPKYNDXGFPITLEENWHKFYELDWFTHKI 526
           P L  + F V I  +SD+ +    V+++  G +  D G      +N H+ Y L+W   K+
Sbjct: 437 PELYSRNFGV-ISYKSDVYSFGMLVLEMVSGRRNLDPGI-----DNQHEVYFLEWIYEKV 490

Query: 527 TPGQNKIV 550
             GQN ++
Sbjct: 491 FTGQNLLI 498


>11_02_0058 +
           7879859-7879951,7880844-7881078,7881165-7881535,
           7881648-7882304
          Length = 451

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 22/85 (25%), Positives = 36/85 (42%)
 Frame = +2

Query: 158 INAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEIKTSYPHN 337
           +N F+  L PYP  ++HF+      V+  +       S  + TNS F     +    P +
Sbjct: 252 VNEFQTNLVPYP--RIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRH 309

Query: 338 FKVRQPRLNHKPFSVTIDVESDIAT 412
            K     L ++   V  DV + +AT
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVAT 334


>03_05_0974 +
           29324025-29324117,29325064-29325298,29325385-29325755,
           29325864-29326520
          Length = 451

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 22/85 (25%), Positives = 36/85 (42%)
 Frame = +2

Query: 158 INAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEIKTSYPHN 337
           +N F+  L PYP  ++HF+      V+  +       S  + TNS F     +    P +
Sbjct: 252 VNEFQTNLVPYP--RIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRH 309

Query: 338 FKVRQPRLNHKPFSVTIDVESDIAT 412
            K     L ++   V  DV + +AT
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVAT 334


>02_01_0401 +
           2927581-2927669,2927795-2927921,2928354-2928437,
           2928546-2928662,2928754-2928945,2929031-2929234,
           2929322-2929809,2930429-2930528,2930686-2930745,
           2931007-2931126,2931407-2931751
          Length = 641

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 506 DWFTHKITPGQNKIVRNSNEFRFSQRTL 589
           DW  H +TP Q  ++R+S+  R  QR L
Sbjct: 581 DWICHHLTPDQVAVIRDSSSQR-KQRLL 607


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,940,526
Number of Sequences: 37544
Number of extensions: 310692
Number of successful extensions: 741
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)