Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_K03
(636 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49909-4|CAA90108.1| 876|Caenorhabditis elegans Hypothetical pr... 30 1.2
AY303577-1|AAP57299.1| 876|Caenorhabditis elegans cell death-re... 30 1.2
Z48585-10|CAJ43439.1| 338|Caenorhabditis elegans Hypothetical p... 29 2.1
Z48585-9|CAD59166.1| 347|Caenorhabditis elegans Hypothetical pr... 29 2.1
U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily ass... 29 2.8
U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore co... 28 4.9
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co... 28 4.9
AL132860-13|CAB60509.1| 292|Caenorhabditis elegans Hypothetical... 28 6.4
AC087081-18|AAK66030.1| 124|Caenorhabditis elegans Hypothetical... 28 6.4
>Z49909-4|CAA90108.1| 876|Caenorhabditis elegans Hypothetical
protein C14A4.4a protein.
Length = 876
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/109 (21%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Frame = +2
Query: 149 VGYINAFKHYLK----PYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEI 316
V +N F Y+ YP+ L ++ ++ DVV++K D+ N++ +E
Sbjct: 371 VHVVNLFDTYVAMKKLKYPKFSLAYLTLRFADVVLDKQYQLADWRARPLRNAMINYARED 430
Query: 317 KTSYPHNFKVRQPRLNHKPFSVTIDVESDIATDAVIKIFLGPKYNDXGF 463
+++ + + +L + +V S+ ++D IK++ P +N G+
Sbjct: 431 THYLLYSYDMLREQLLKQDTKDLANVYSE-SSDLCIKVYKKPVFNPKGY 478
>AY303577-1|AAP57299.1| 876|Caenorhabditis elegans cell
death-related nuclease 3 protein.
Length = 876
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/109 (21%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Frame = +2
Query: 149 VGYINAFKHYLK----PYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEI 316
V +N F Y+ YP+ L ++ ++ DVV++K D+ N++ +E
Sbjct: 371 VHVVNLFDTYVAMKKLKYPKFSLAYLTLRFADVVLDKQYQLADWRARPLRNAMINYARED 430
Query: 317 KTSYPHNFKVRQPRLNHKPFSVTIDVESDIATDAVIKIFLGPKYNDXGF 463
+++ + + +L + +V S+ ++D IK++ P +N G+
Sbjct: 431 THYLLYSYDMLREQLLKQDTKDLANVYSE-SSDLCIKVYKKPVFNPKGY 478
>Z48585-10|CAJ43439.1| 338|Caenorhabditis elegans Hypothetical
protein ZK673.11b protein.
Length = 338
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 242 EKLVTFFDYSQFDATNSVFLTKKEIKTS-YPHNFKVRQPRLNHKPFSVTIDVESDIAT 412
E V+ +++S+ NS + I S Y +NF V N + F +I ESD+A+
Sbjct: 229 EDQVSIYEFSRVSDPNSEHSSSNSISDSFYLNNFDVISSAANSQIFEASICGESDVAS 286
>Z48585-9|CAD59166.1| 347|Caenorhabditis elegans Hypothetical
protein ZK673.11a protein.
Length = 347
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 242 EKLVTFFDYSQFDATNSVFLTKKEIKTS-YPHNFKVRQPRLNHKPFSVTIDVESDIAT 412
E V+ +++S+ NS + I S Y +NF V N + F +I ESD+A+
Sbjct: 238 EDQVSIYEFSRVSDPNSEHSSSNSISDSFYLNNFDVISSAANSQIFEASICGESDVAS 295
>U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily
assigned gene nameprotein 59 protein.
Length = 1592
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -3
Query: 355 WLTNLEVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNIIDFNADEM 206
W+TNL + NL+F +Y + G L ++ + + +++ F EM
Sbjct: 142 WITNLHYAFQDEKNLYFVMDYYIGGDMLTLLSKFVDHIPESMAKFYIAEM 191
>U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform b protein.
Length = 889
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 54 NHSTSTPSCPVRLTFTKPHFETLHSISYIT--GLWVTLTHSSIT 179
+HS STP P+R + T H + ++ISY T G V +T S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230
>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform a protein.
Length = 1562
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 54 NHSTSTPSCPVRLTFTKPHFETLHSISYIT--GLWVTLTHSSIT 179
+HS STP P+R + T H + ++ISY T G V +T S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230
>AL132860-13|CAB60509.1| 292|Caenorhabditis elegans Hypothetical
protein Y56A3A.15 protein.
Length = 292
Score = 27.9 bits (59), Expect = 6.4
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +2
Query: 368 KPFSVTIDVESDIATDAVIKIFLGPKYNDXGF---PITLEENWHKFYELDWFTHKITPGQ 538
K F V I S+I + ++++F P ++ G PI + H FY L++F K+T
Sbjct: 143 KTFGVKI-ASSEIQSSHLLELF--PSLSNLGVYNVPINTQILTHNFYWLEFFKTKVTL-D 198
Query: 539 NKIVRNSNEFRFSQRTL 589
+ +V N ++F L
Sbjct: 199 DILVSNCSKFSIEYNNL 215
>AC087081-18|AAK66030.1| 124|Caenorhabditis elegans Hypothetical
protein Y82E9BL.1 protein.
Length = 124
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 535 PRSYLVREPIQFVEFMPVFFQCDGESXIVV 446
P+S L+R+PIQ V+ V CDGE+ + +
Sbjct: 93 PQS-LLRKPIQIVDDCSVKMYCDGEAKLFI 121
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,057,934
Number of Sequences: 27780
Number of extensions: 288288
Number of successful extensions: 776
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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